Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33590 217 / 1e-68 unknown protein AT4G33600 211 / 3e-66 unknown protein AT3G18180 42 / 0.0003 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041131 [exp] 424 / 7e-150 AT4G33590 443 / 3e-153 unknown protein Lus10001351 [exp] 213 / 2e-66 AT4G33590 519 / 0.0 unknown protein Lus10018046 [exp] 43 / 0.0001 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10035441 [exp] 42 / 0.0004 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018048 [exp] 41 / 0.0005 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 41 / 0.0007 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102300 [exp] 300 / 9e-101 AT4G33600 464 / 3e-161 unknown protein Potri.007G112500 [exp] 231 / 1e-73 AT4G33590 564 / 0.0 unknown protein Potri.017G048300 [exp] 228 / 2e-72 AT4G33600 573 / 0.0 unknown protein Potri.016G057000 [exp] 40 / 0.0007 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036462 pacid=23174578 polypeptide=Lus10036462 locus=Lus10036462.g ID=Lus10036462.BGIv1.0 annot-version=v1.0 ATGAGGCACAATATGGGGGGTATAGGGGTGGAGAAGACGCTTCGAGTTTACGATCAGCTGAGATGCAGAGCACGGAGGTACTGTGGGATTAATCCTGATC TTGTTGCTGAAAGCAACAAGATCAGGCTGACCTTGCTAATGAGGAAAGGCTCGAGATCGTTTAAAGATCCGGAAGCTGTGAGCGAGATATTCGCCAAGGA ATGTGCGAAAATCGAAGGCTGTGTTCTGAAAGTAGTTCAGTCGGAGGAACTAAGAAGCTTCTGTGACCAAGTAAGGACAATGACGGAAACGGATATTGTG GCATCGCCACATGGAGCTCAGTTGACGAACATGATGTTCATGGACCGAGGGAGCAGCGTGATGGAGTTTTTCCCGAAGGGATGGTTCGAGCTGGGCGGAA TCGGTCAGTATGTCTTCCACTGGATGGCTGGTCAATCCGGGATGATCCACCGGGGATCGTGGTGGGAGCCTCTTTCGAAGCTTGAATGCCCGAAACCTGA GAATAAGCTGGAATGTTTCTTCTTCTATAAAGATGGTCGGGTGGGCCATAACGAGACACATTTGACGGAATGGGCAAGAAGGGTGATCAATCAAGTTAGC GCTAGAAAGATAAAAGATGGGGAAAAGACGATTTCACATACCAGCTCGGATGATGGCTGCATCTGCTAA
AA sequence Show only first row Show all	>Lus10036462 pacid=23174578 polypeptide=Lus10036462 locus=Lus10036462.g ID=Lus10036462.BGIv1.0 annot-version=v1.0 MRHNMGGIGVEKTLRVYDQLRCRARRYCGINPDLVAESNKIRLTLLMRKGSRSFKDPEAVSEIFAKECAKIEGCVLKVVQSEELRSFCDQVRTMTETDIV ASPHGAQLTNMMFMDRGSSVMEFFPKGWFELGGIGQYVFHWMAGQSGMIHRGSWWEPLSKLECPKPENKLECFFFYKDGRVGHNETHLTEWARRVINQVS ARKIKDGEKTISHTSSDDGCIC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33590			unknown protein		Lus10036462 [exp]	0	1
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	11.4	0.7955
					Lus10007590 [exp]	11.8	0.7338
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	13.8	0.8001
AT2G04480			unknown protein		Lus10001750 [exp]	17.3	0.7643
AT1G47670			Transmembrane amino acid trans...		Lus10012281 [exp]	19.2	0.7269
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10003511 [exp]	23.0	0.7886
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10038392 [exp]	30.9	0.7894
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	41.7	0.7758
AT4G04980			unknown protein		Lus10036173 [exp]	47.3	0.7309
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Lus10024347 [exp]	48.0	0.7177

Compare expression of checked genes

Lus10036462 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.