Plant FIBer expression Database

Lus10036463 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33590 157 / 2e-46 unknown protein
AT4G33600 157 / 3e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041131
[exp]
252 / 4e-83 AT4G33590 443 / 3e-153 unknown protein
Lus10001351
[exp]
135 / 6e-38 AT4G33590 519 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G102300
[exp]
191 / 3e-59 AT4G33600 464 / 3e-161 unknown protein
Potri.007G112500
[exp]
170 / 4e-51 AT4G33590 564 / 0.0 unknown protein
Potri.017G048300
[exp]
162 / 3e-48 AT4G33600 573 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10036463 pacid=23174580 polypeptide=Lus10036463 locus=Lus10036463.g ID=Lus10036463.BGIv1.0 annot-version=v1.0
ATGGATGAAACAAAACCAAGCTCCAAGTTCACTTCCAAAATCGTTCTGGCCACCTTCATTTCCCTCACTCTGCTGTTTCTCAGCTTTCTTCAGCTCCAAG
CTTCCCCTTTCTACTCATCATTCCGAAATTCGTCGAACAGATCCGATAACAACGATGGTTTATCAACTCAGAAGCTCCGAGACTCGGTCACTTTCCTCCC
GCTGAAAGACCTTCGGTTCGCGGACACCGCCATGGAAGGCAACACTTGGTTCATGAGCTCGTTGGCCGACACTCGGGAAGTCAACGAGTCTGAATACCTC
TACTTCCCTTCGGCAACATCGAAGGGAAGGCTTCTATGCATTCGGGGTAACAACACCAAAGACGGTAGCAAAAATTCATACGCAATGGCCTGGCCGGAAG
CTCTTCCCGAAAATGCGAGGATTATGCGAGGCTTGACATTCGTGTCAGACACTTATTTCGACTATGTCAACCTGTGGCATGGTTTGACAGCAATGGTGCC
TTTCATATGA
AA sequence
>Lus10036463 pacid=23174580 polypeptide=Lus10036463 locus=Lus10036463.g ID=Lus10036463.BGIv1.0 annot-version=v1.0
MDETKPSSKFTSKIVLATFISLTLLFLSFLQLQASPFYSSFRNSSNRSDNNDGLSTQKLRDSVTFLPLKDLRFADTAMEGNTWFMSSLADTREVNESEYL
YFPSATSKGRLLCIRGNNTKDGSKNSYAMAWPEALPENARIMRGLTFVSDTYFDYVNLWHGLTAMVPFI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G33590 unknown protein Lus10036463
[exp]
0 1
AT2G25830 YebC-related (.1) Lus10011628
[exp]
3.6 0.7939
AT4G37560 Acetamidase/Formamidase family... Lus10019293
[exp]
9.2 0.8151
AT5G55840 Pentatricopeptide repeat (PPR)... Lus10038697
[exp]
17.4 0.7367
AT5G47450 ATTIP2;3, DELTA... DELTA-TONOPLAST INTRINSIC PROT... Lus10007796
[exp]
34.2 0.8039
Lus10004065
[exp]
39.6 0.7547
AT4G12240 C2H2ZnF zinc finger (C2H2 type) family... Lus10024570
[exp]
40.3 0.8011
AT5G47450 ATTIP2;3, DELTA... DELTA-TONOPLAST INTRINSIC PROT... Lus10004733
[exp]
42.0 0.8002
AT4G40080 ENTH/ANTH/VHS superfamily prot... Lus10002642
[exp]
44.9 0.7300
AT4G09900 ATMES12 ARABIDOPSIS THALIANA METHYL ES... Lus10003511
[exp]
59.4 0.7821
AT5G66040 STR16 sulfurtransferase protein 16 (... Lus10005635
[exp]
69.6 0.7854

Lus10036463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.