Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12680 564 / 0 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G76040 261 / 4e-81 CPK29 calcium-dependent protein kinase 29 (.1.2) AT1G12580 258 / 4e-80 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT2G38910 249 / 2e-76 CPK20 calcium-dependent protein kinase 20 (.1) AT1G50700 246 / 1e-75 CPK33 calcium-dependent protein kinase 33 (.1) AT1G35670 244 / 2e-75 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT4G35310 245 / 7e-75 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT4G09570 243 / 7e-75 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT3G20410 244 / 1e-74 CPK9 calmodulin-domain protein kinase 9 (.1) AT2G35890 243 / 1e-74 CPK25 calcium-dependent protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041132 [exp] 840 / 0 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10015009 [exp] 255 / 3e-79 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10038889 [exp] 251 / 8e-78 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10008958 [exp] 249 / 4e-77 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10017251 [exp] 248 / 1e-76 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10028862 [exp] 250 / 2e-76 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10006777 [exp] 246 / 1e-75 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10029346 [exp] 245 / 6e-75 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10021531 [exp] 244 / 2e-74 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251500 [exp] 608 / 0 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.017G048400 [exp] 487 / 2e-170 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G112400 [exp] 480 / 1e-167 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.012G134600 [exp] 254 / 5e-79 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.013G112500 [exp] 254 / 8e-79 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.003G120800 [exp] 251 / 2e-77 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.010G244800 [exp] 251 / 5e-77 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.019G083200 [exp] 249 / 8e-77 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.006G200600 [exp] 250 / 2e-76 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G065700 [exp] 248 / 9e-76 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036464 pacid=23174686 polypeptide=Lus10036464 locus=Lus10036464.g ID=Lus10036464.BGIv1.0 annot-version=v1.0 ATGAGGAAAAAGAGGAAAGGTGGAGAAAGTGATGATTTGACGTCCTATTACTCATTGGAGGATTACGATAGGATAAACAAGAAGTGTAAAGAGGTTGATG ATGATGATGCAAAAGGCAAAGAGCCGCCAATCAATTCATTGAAAAGCAGGCTTGCAGGGGTTGCAACTGCACCACCTTCAACTTCTTCATTGGCATCTCC AGGGAGAGGGCTCAAGAGAAAGATAGGGTGCATCGAAGTTACGACTCAAACCGGTAGGAAGAACAGGATCGAAGACGACTACACCTTTGGCGAGACCCTA GGGAAAGGGAAGTTCGGTTCTGTTTCGTTGTGTAGGTCCAGAGCGTCCGGGGAGGAGTTTGCTTGTAAGACGTTGAAGAAGGGGGAAGAGACTGTTCACA GAGAGGTCGAGATAATGCAGCATTTGTCCGGACATCCTGGTGTTGTGACATTGCACGCTGTGTATGAAGAATTGGAGTTCTTCCACTTAGTGATGGAGTT CTGCTCCGAAGGAAGATTGATTGATCAGATGGTTAAAGAGGATCAGTACTCGGAACAACGGGCTGCCAATGTGGTCAAGGATGTGATGTTGGTGATCAAG TATTGCCATGAGATGGGTGTTGTTCATAGAGATATTAAGCCGGAGAATATACTTCTTGTTAGCTCGGGGAAGATCAAGCTTGCTGATTTCGGCCTTGCCA TGAGGATTTCGAACGGTCAGAAGCTATCCGGTTTGGCAGGAAGTCCGGCGTATGTTGCACCCGAAGTTCTGCAAGGAAACTATTCCGAGGAGGTTGATAT ATGGAGTGCTGGTGTTCTGCTGCACGCCCTCTTGACTGGTGTTCTTCCTTTTCAAGGGGACTCGTTGGAATCGGTTTTCGAGGCGATCAAATCCGCAAAG CTTGATTTCCAGACAGGGATATGGGATTCGGTGTCCAAACCCGCACGGGACTTGCTTGCAAGAATGTTGGCTAGGGATGTTTCTACTCGGATAACTGCAG ATGAAGCACTAAGGCATCCATGGGTGTTATTCTACACAGATCGCACGTTGAAACCCTTGTCCTTCAAGTCAAAGCCAAGGAACGACCAGGGTCGACCAGT TTCAACGCAGGAAGCGATTGCTGCACCTGAATCGGCAGAACTGTGTGGAAAGTGGTGGCGGAAGCATCCAGTTTTCGATAGTTTAAGCTGCAAGTCTGAA GCAGAGGAGGACGAGGTGGAGGAAGAAGAATGTGAATTGGTCGTGGATGCACTGGCGGTGGCGATGTCGCAGGTGAAGATCTCGGAACCGAAGAGAAGCA GGCTGTGTAGCCCTGCGAGGCCGATAGAACCGCAATGTTCAGCTAACATCACAGCCAGCAGCACCCTTTGTAGAGCTTTCTGA
AA sequence Show only first row Show all	>Lus10036464 pacid=23174686 polypeptide=Lus10036464 locus=Lus10036464.g ID=Lus10036464.BGIv1.0 annot-version=v1.0 MRKKRKGGESDDLTSYYSLEDYDRINKKCKEVDDDDAKGKEPPINSLKSRLAGVATAPPSTSSLASPGRGLKRKIGCIEVTTQTGRKNRIEDDYTFGETL GKGKFGSVSLCRSRASGEEFACKTLKKGEETVHREVEIMQHLSGHPGVVTLHAVYEELEFFHLVMEFCSEGRLIDQMVKEDQYSEQRAANVVKDVMLVIK YCHEMGVVHRDIKPENILLVSSGKIKLADFGLAMRISNGQKLSGLAGSPAYVAPEVLQGNYSEEVDIWSAGVLLHALLTGVLPFQGDSLESVFEAIKSAK LDFQTGIWDSVSKPARDLLARMLARDVSTRITADEALRHPWVLFYTDRTLKPLSFKSKPRNDQGRPVSTQEAIAAPESAELCGKWWRKHPVFDSLSCKSE AEEDEVEEEECELVVDALAVAMSQVKISEPKRSRLCSPARPIEPQCSANITASSTLCRAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10036464 [exp]	0	1
AT3G14830			unknown protein		Lus10005552 [exp]	2.0	0.9226
AT4G26980			RNI-like superfamily protein (...		Lus10032638 [exp]	4.2	0.8876
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	4.9	0.8970
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	8.0	0.9111
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10008294 [exp]	8.0	0.8993
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10014839 [exp]	12.0	0.8783
AT1G12450			SNARE associated Golgi protein...		Lus10007018 [exp]	12.6	0.8706
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10027659 [exp]	13.0	0.8999
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10009886 [exp]	13.7	0.8680
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10011341 [exp]	13.8	0.8974

Compare expression of checked genes

Lus10036464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.