Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09120 165 / 2e-47 RING/U-box superfamily protein (.1) AT1G35330 155 / 8e-44 RING/U-box superfamily protein (.1) AT2G35000 154 / 4e-43 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT1G72200 154 / 1e-42 RING/U-box superfamily protein (.1) AT5G27420 148 / 8e-41 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT3G05200 147 / 2e-40 ATL6 RING/U-box superfamily protein (.1) AT4G09130 146 / 4e-40 RING/U-box superfamily protein (.1) AT2G34990 143 / 1e-39 RING/U-box superfamily protein (.1) AT1G22500 142 / 2e-38 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT4G09110 133 / 8e-36 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041134 [exp] 525 / 0 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10029794 [exp] 253 / 4e-80 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10004460 [exp] 176 / 5e-51 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10000333 [exp] 172 / 2e-49 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 157 / 1e-44 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 156 / 3e-44 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10035368 [exp] 111 / 1e-27 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10029949 [exp] 107 / 1e-26 AT3G05200 171 / 1e-50 RING/U-box superfamily protein (.1) Lus10030972 [exp] 104 / 4e-25 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160900 [exp] 170 / 2e-48 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 168 / 3e-48 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 166 / 2e-47 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.001G140900 [exp] 109 / 3e-27 AT4G17920 183 / 3e-56 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 103 / 3e-24 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.003G093500 [exp] 99 / 2e-23 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 99 / 2e-22 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.009G110000 [exp] 97 / 6e-22 AT3G18930 227 / 5e-70 RING/U-box superfamily protein (.1.2) Potri.018G085001 [exp] 97 / 8e-22 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 94 / 5e-21 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10036466 pacid=23174665 polypeptide=Lus10036466 locus=Lus10036466.g ID=Lus10036466.BGIv1.0 annot-version=v1.0 ATGAACATACCTAAACTCGCCGCCGTGTTGTTCTTCTACATGTTTCACCAGGCGGCGGGACAGGCCGGAAACATCTTTTCCACGCCGCCGGCGAAAAAAA TGTACACCTTGGAAACCCAACTGACCCACATGATGGTAATCATGATTGTCGTCCTCGTAATCGCTCTCCTCTTCATGGGTTCCATCGCCATCTACGCCCG ACGCCGGAGATACCTCGCCGGCGAGGACTTCCATTTCGAGCACTTGTACGGCGGCGCCGTTGGACGATGGTCAATCCACGAGCCACCAGGACTTGACTCG GAGGTCATTCACACGTTTCCGACTTTTCTCTATTCTTCCGTAAAAGGGTTGAAAATCGGGAAAGGCGGGCTCGAATGCGCAATCTGTATAAGCGAGTTCG AGGACGCCGAAACGCTGCGTTTGATACCAAAGTGCAGCCACGTGTTCCATGTGGATTGCATCGATGCGTGGCTTGTTTCTAACACGACTTGCCCGGTTTG CAGGGCCGACCTGACTCGATCTGAATCCGACCACCAATTGGTCTTTGTTTCAGATCAAGAGGTTGATCCTCGACCTGATCTAGATAATTATGTTATTCCA GATGACAGTGTTAGTGATCATGTCATTGTGAGTAGTGGCGATCAGCTTTCCTGTTCAAATGATTGGAAGGGCCGCTCGAGTAGGTGGAGTCTAACGCGGT TGTTCCCAAGGTCGCATTCAACCGGTCATACTTCGTTGGGAAGGGATCTAGAGCGGTTCACTCTAAAACTCCCGGACGAAATACGAAATCGGTTAATGAG TACAGAACTGAATCGAGCGAAGAGTTGCAATGTGGTTTTCACTAGGGCGAGGAGCGGAAGGAGAGGGTTTAGGAGCGAGGGTAGTGGGAGCTATGATCAG AAATTTGACATTGACCTCGAAAATCCATATGTTCGAGGTCAAGGTCTTCCACCTCTTCCGCCCAAATTAGGTTCTATAAATACTAGTACAAAAAGGGTGA CAAGTGGAAAGAACGTGGAGGACTCTAGTGGAAGTGTACCAAGAAGGTCATCTAAGTCGATTAGATCTTCGTTCGATCGGTTCTTACTTGGACTTGATAG TGACTATAGTAGCCAAAAACCGATTGGTGAACGGTCGATTGATCGGTTGAGGCTGGCCGATAGTGAGGTTTAG
AA sequence Show only first row Show all	>Lus10036466 pacid=23174665 polypeptide=Lus10036466 locus=Lus10036466.g ID=Lus10036466.BGIv1.0 annot-version=v1.0 MNIPKLAAVLFFYMFHQAAGQAGNIFSTPPAKKMYTLETQLTHMMVIMIVVLVIALLFMGSIAIYARRRRYLAGEDFHFEHLYGGAVGRWSIHEPPGLDS EVIHTFPTFLYSSVKGLKIGKGGLECAICISEFEDAETLRLIPKCSHVFHVDCIDAWLVSNTTCPVCRADLTRSESDHQLVFVSDQEVDPRPDLDNYVIP DDSVSDHVIVSSGDQLSCSNDWKGRSSRWSLTRLFPRSHSTGHTSLGRDLERFTLKLPDEIRNRLMSTELNRAKSCNVVFTRARSGRRGFRSEGSGSYDQ KFDIDLENPYVRGQGLPPLPPKLGSINTSTKRVTSGKNVEDSSGSVPRRSSKSIRSSFDRFLLGLDSDYSSQKPIGERSIDRLRLADSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72200			RING/U-box superfamily protein...		Lus10036466 [exp]	0	1
					Lus10026713 [exp]	4.5	0.9396
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	6.6	0.9370
					Lus10008791 [exp]	8.1	0.9370
					Lus10021851 [exp]	9.4	0.9370
					Lus10012440 [exp]	10.5	0.9370
AT4G18425			Protein of unknown function (D...		Lus10013974 [exp]	11.2	0.7487
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	11.5	0.9291
					Lus10031183 [exp]	12.4	0.9289
					Lus10020451 [exp]	13.3	0.9283
AT2G44525			Protein of unknown function (D...		Lus10007558 [exp]	13.8	0.6612

Compare expression of checked genes

Lus10036466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.