Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09060 247 / 2e-79 unknown protein AT1G14680 232 / 1e-74 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041137 [exp] 499 / 1e-179 AT4G09060 224 / 1e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101400 [exp] 300 / 1e-100 AT4G09060 191 / 4e-58 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036467 pacid=23174584 polypeptide=Lus10036467 locus=Lus10036467.g ID=Lus10036467.BGIv1.0 annot-version=v1.0 ATGGAGATCCCGCAAGAACTCGACGGCTACCTGAGGGAAACGATCGAAGATTCATTAGGCCTTCCAGTCTCAACACACACTCTACGCCAAAAGCTCCGAT CGTCTGAGGATGCACATCGCCGTATCCTCCGTCAGTGCATCGTTCTTGACGAGAAGCTACGCGAGAAGGATCAGATCCTTGACCGCGCTAGGGCTGAGGC GACTATGAACGCTGTGGCTTTGAAGAAGTTCGTGGAGGAGAATCAGAAATTGGCAGAGGAGTGCGCGAATCTGGTGGCTCAATGTAAGAAGTGGGAAAGG GAGTGTACGCTTTACGATAATGACAGGGAGGCTCTGATGGAGTTTGGGAATGAGGCGGATGAGAGAGCCAAAGATGCTGAAATGAGGGTTCACGAGTTGG AAGACACGCTGCAGCGTTTGTCGGAGGAGTTGAAGGTTTGCAAGCATGAGTATGAAAGTCGTGGGAAACTGATCAACTGTTCCCGGGTGATGTTTCAGAA TAAGATGGACGCTTCATCAGCTGAGAGCACAAACGGGGAAGACCATATGGTTGACTCAGTTCTAACAACTCTGACCCGTGAAGATGAAATAAGCTGTGGT CGTGCTTTTCTCGAGGCAAATAGGGATCAAGAGCCATGTCGAAAGTTGCTCAAGATATGGAGCAGTTTGAAGCCATCAAATCAAAAGGTTATGTTACTTG CTGCTAAAGTGAACATCCTTGAGAACGCTAAAGAACATCTTAGGATCAACCTCACAAGAGCTGAAGAAGAGGTGGAGTTGCTATTCCAAGAGAACAAAAT ATTGAATGAGGAGAACCGAAAGCTAGTGAAACAGCTCAAGAGAGAAAGAAACTCTGATGCCTCTGGCGAAAAACAATGTAGCAGTGGATCTTCGAAGAGG AGCAAACGGAAGTCGTCGAGTCCCAGAAGTAGTGTGAGTTCAGTTGGAGGGAAGATCGACTTCGGGCAGGAAATGGAGCAGATTTTGAGGCAGCCGCTGT CACCATTGCGTCAAAACTCGGTTGATGTTCAAATGATTTGA
AA sequence Show only first row Show all	>Lus10036467 pacid=23174584 polypeptide=Lus10036467 locus=Lus10036467.g ID=Lus10036467.BGIv1.0 annot-version=v1.0 MEIPQELDGYLRETIEDSLGLPVSTHTLRQKLRSSEDAHRRILRQCIVLDEKLREKDQILDRARAEATMNAVALKKFVEENQKLAEECANLVAQCKKWER ECTLYDNDREALMEFGNEADERAKDAEMRVHELEDTLQRLSEELKVCKHEYESRGKLINCSRVMFQNKMDASSAESTNGEDHMVDSVLTTLTREDEISCG RAFLEANRDQEPCRKLLKIWSSLKPSNQKVMLLAAKVNILENAKEHLRINLTRAEEEVELLFQENKILNEENRKLVKQLKRERNSDASGEKQCSSGSSKR SKRKSSSPRSSVSSVGGKIDFGQEMEQILRQPLSPLRQNSVDVQMI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09060			unknown protein		Lus10036467 [exp]	0	1
AT3G58650			unknown protein		Lus10016854 [exp]	2.4	0.9621
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	3.7	0.9652
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	4.5	0.9672
AT4G09060			unknown protein		Lus10041137 [exp]	5.2	0.9479
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	10.0	0.9566
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	12.2	0.9525
AT5G26910			unknown protein		Lus10037725 [exp]	12.6	0.9483
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	13.0	0.9502
AT5G60930			P-loop containing nucleoside t...		Lus10000762 [exp]	13.6	0.9544
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	18.2	0.9443

Compare expression of checked genes

Lus10036467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.