Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09040 116 / 2e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 72 / 2e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 54 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60000 52 / 7e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 50 / 6e-07 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G52150 47 / 3e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G50250 45 / 1e-05 CP31B chloroplast RNA-binding protein 31B (.1) AT4G00830 44 / 5e-05 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G39260 41 / 7e-05 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT5G64200 43 / 9e-05 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041138 [exp] 371 / 2e-130 AT4G09040 201 / 7e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10020945 [exp] 128 / 2e-35 AT4G09040 219 / 6e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10008721 [exp] 127 / 3e-35 AT4G09040 218 / 8e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10035678 [exp] 61 / 1e-10 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037265 [exp] 61 / 2e-10 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026514 [exp] 52 / 8e-08 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 52 / 1e-07 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041602 [exp] 51 / 2e-07 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023191 [exp] 51 / 3e-07 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161000 [exp] 131 / 2e-36 AT4G09040 219 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G141300 [exp] 65 / 6e-12 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G065600 [exp] 62 / 4e-11 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G172100 [exp] 61 / 1e-10 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G065900 [exp] 57 / 2e-09 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G127200 [exp] 57 / 3e-09 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 55 / 1e-08 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.010G209701 [exp] 53 / 9e-08 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.006G202000 [exp] 50 / 3e-07 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.014G105800 [exp] 47 / 4e-06 AT1G01080 271 / 7e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10036468 pacid=23174396 polypeptide=Lus10036468 locus=Lus10036468.g ID=Lus10036468.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCGATGCTCCGAGTTTCCTCTTCACTAGCAACGTCATCCTTTCCCGATAGACTTCCTTCTTCTTATTCTTTATCTCTTCAGAGCTCATTTG GGTACTTTACCCTTCCATTTTCTCCTCCATCCCACTTCGTCCCTCTCTGTCTTGTTCGAACCAACGCAGTTACGCCTTTAGCTTCTTCTTCTTCTTCTCC AGTTCAAGCCGTGCTCCAAAGTTTTGGCTACGGAGAAGATAAAAAAGAAGAAATAGTAGAAGAAGAATTTCTTAAGGACAGGATTTGCGCTTCTAATTTT CCATGGACATCGACTACAGAGGACATCCGGTCATTGTTCGAGAAATTCGGTGCCGTTGTGGACATTGAGGTTCCGATGCACTCAAAGGGCAAGGGTAGAG GTCTGGCGTTTGTTACAATGGCGTCTCCTGAGGAAGCTGCTTCTGCCATGGAGAACCTGGATAATTATGAATACGGTGGGCGACCCTTGAAGATGAACTA TGCCAAACCCAAGAAACAGAAGTACACTTCATCGACACCGAAGAACTTGACCACCAAGCAAGGTCCACCGGCGTTCTGCTTGTACGTTTCGAATTTGTCA TATGAAGCTAACGAAGAGGACTTGAAGCAGTTTTTCGTTGAAGGAGGGGCTAATATCCTTGCCGCTGAGCTTATATATACTCAGAATCCTAGAAGGTCCA CTGGCTTCGGATTCGTCTTCTTCAAAATAAAAGGGAAGCTGAAGCAGCCATCTCTACTTTCCAAGATAAGGTAG
AA sequence Show only first row Show all	>Lus10036468 pacid=23174396 polypeptide=Lus10036468 locus=Lus10036468.g ID=Lus10036468.BGIv1.0 annot-version=v1.0 MAASMLRVSSSLATSSFPDRLPSSYSLSLQSSFGYFTLPFSPPSHFVPLCLVRTNAVTPLASSSSSPVQAVLQSFGYGEDKKEEIVEEEFLKDRICASNF PWTSTTEDIRSLFEKFGAVVDIEVPMHSKGKGRGLAFVTMASPEEAASAMENLDNYEYGGRPLKMNYAKPKKQKYTSSTPKNLTTKQGPPAFCLYVSNLS YEANEEDLKQFFVEGGANILAAELIYTQNPRRSTGFGFVFFKIKGKLKQPSLLSKIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10036468 [exp]	0	1
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	1.7	0.9664
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	5.5	0.9641
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	6.2	0.9631
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026888 [exp]	7.1	0.9404
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	7.5	0.9555
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	7.7	0.9601
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	9.7	0.9571
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10027829 [exp]	10.3	0.9225
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	13.1	0.9536
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	14.1	0.9558

Compare expression of checked genes

Lus10036468 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.