Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78160 434 / 2e-146 APUM7 pumilio 7 (.1) AT1G22240 415 / 1e-140 APUM8 pumilio 8 (.1) AT1G35730 358 / 1e-117 APUM9 pumilio 9 (.1) AT4G08840 347 / 1e-113 APUM11 pumilio 11 (.1) AT1G35750 332 / 4e-108 APUM10 pumilio 10 (.1) AT5G56510 332 / 3e-107 APUM12 pumilio 12 (.1) AT3G20250 184 / 6e-50 APUM5 pumilio 5 (.1) AT2G29190 182 / 2e-49 APUM2 pumilio 2 (.1.2) AT3G10360 179 / 3e-48 APUM4 pumilio 4 (.1) AT2G29140 177 / 9e-48 APUM3 pumilio 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041139 [exp] 902 / 0 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10024793 [exp] 277 / 2e-86 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10018710 [exp] 273 / 5e-85 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10037976 [exp] 191 / 2e-52 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 176 / 3e-50 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 182 / 2e-49 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10001567 [exp] 182 / 3e-49 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10038706 [exp] 181 / 6e-49 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10033353 [exp] 180 / 1e-48 AT3G20250 732 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095400 [exp] 462 / 5e-156 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.003G222300 [exp] 358 / 1e-115 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G002600 [exp] 351 / 6e-113 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G120900 [exp] 261 / 7e-81 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 255 / 1e-78 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.001G298000 [exp] 194 / 6e-55 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.008G036500 [exp] 197 / 1e-54 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 197 / 3e-54 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.010G201100 [exp] 181 / 6e-49 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.003G009900 [exp] 181 / 8e-49 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Lus10036469 pacid=23174400 polypeptide=Lus10036469 locus=Lus10036469.g ID=Lus10036469.BGIv1.0 annot-version=v1.0 ATGGCGTATGATGATGACGATAATGATGAACTGGTGGACCGCCTGTCTCAAAGGTTTCATGAATTTCAAATCCGGGACCAGATTCGTACTGGATTCCTCT CCGATGGGTTTATTCACGGCGGCGGAGGTGGAGGAGATCGACATCATCAGTACTACAACAACTATGGGGCGAATTCATACGGAGATTTCAACAACGGCAC CGTTTACGATTCCAAGTGTACTGCTAGGTTTGGTGGTGGGCCCCATCAGAACGGAGTTTATGATTCCATGCGGCCGGTTACATCGGTCGTTGGCCGGAAT CATAATCATCATGATGATAATCATCTCAACGGCGGTGGTTGGAACAATCCGGACCAGTCAAGGATTGAAGCTTACAAAAGGGTGATGTTGACAGAATGGG CAAGAAGAGGCAGTATCCCTAGTACTGAAACTCACAACAATGATGCTTCAGCTCGCCATTCTTTCCAGATTCCATCTGAAGAAAGCGCCAATAACCATAA TCCAAGGGAAAAAAGCTCCATCGTCAAGGAAACTCTGAACAACAATGTTAACAACACTACTACTTGTTCATCCTGCCAGGTGGAAGGCCATGTGTACTCA ATGGCCAAAGACCAAAACGGCTGCCGCTTCCTGCAGAGAGTGTTCGAAGAAGGCTCCACCAAGGAAATGGGGATGATATTCGAAGAAATTGTCGACCATG TCGTCGAGCTTTCGCTGAATCAGTTTGGAAACTATGTAATCCAGAAGATATTGGATGTGTGTGATGAGGCACAAAGGCTGAAGATTGTTTTTGTGCTCAC TAAAGAAGCTGGGCAGCTGGTCAAGATCAGCTTGAATACATACGGGACACGTGTTGTGCAAAAGCTGGTTGAGACTCTCAAGACGAGACAACAGATTACC TTAGTTGTGTTAGCGTTGAAGCCTGGTCTCAGAGATGTGGTTGAAGATCAGAATGGGAATCATGTTGTTCAGAGTTGCTTGAAATACCTCAGCAATGACG ATAACAAGTTCATCTTTGATGCTGCTTCAAAGTTCTGTGTTGATATTGGAACACACCAGCATGGATGCTGCGTGATGCAGAAATGCATTGATCACTTCAA GGGGAAGTATCTTGACAAGCTAGTCACCGAGATTTCCAAGCAAGCCGTCCGACTCTCTCAAGATCCATTCGGAAACTATGTGATTCAGCATGTGATAGAG CAAGAGAATCCATTAATGACTGCAAAGCTTCTCCCACAGCTGGAAGGCAACTTTGTGCACCTCTCGATGCAGAAATGCAGCAGCAATGTCGTCGAAAGGT GCATCAAGCACTGCGAAGAAAGCAGGGCGCATATAGTCCACGAGCTGCTCTCTGTACCTCACTTTGATCAGCTTCTTCAGGATCCCTTCGCCAACTACGT CATCCAAACCGCTCTCATCTTCACCAAGGGTCCACTTCATTCTCTGCTGGTGGATGCGATCCGTCCGCATTCGAGGTTGCGTACGAGTCCGTACTGCAAG AGGATCTTCTCAAGAAACATGTTGAGGAAATGA
AA sequence Show only first row Show all	>Lus10036469 pacid=23174400 polypeptide=Lus10036469 locus=Lus10036469.g ID=Lus10036469.BGIv1.0 annot-version=v1.0 MAYDDDDNDELVDRLSQRFHEFQIRDQIRTGFLSDGFIHGGGGGGDRHHQYYNNYGANSYGDFNNGTVYDSKCTARFGGGPHQNGVYDSMRPVTSVVGRN HNHHDDNHLNGGGWNNPDQSRIEAYKRVMLTEWARRGSIPSTETHNNDASARHSFQIPSEESANNHNPREKSSIVKETLNNNVNNTTTCSSCQVEGHVYS MAKDQNGCRFLQRVFEEGSTKEMGMIFEEIVDHVVELSLNQFGNYVIQKILDVCDEAQRLKIVFVLTKEAGQLVKISLNTYGTRVVQKLVETLKTRQQIT LVVLALKPGLRDVVEDQNGNHVVQSCLKYLSNDDNKFIFDAASKFCVDIGTHQHGCCVMQKCIDHFKGKYLDKLVTEISKQAVRLSQDPFGNYVIQHVIE QENPLMTAKLLPQLEGNFVHLSMQKCSSNVVERCIKHCEESRAHIVHELLSVPHFDQLLQDPFANYVIQTALIFTKGPLHSLLVDAIRPHSRLRTSPYCK RIFSRNMLRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78160		APUM7	pumilio 7 (.1)		Lus10036469 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10019058 [exp]	14.2	0.6964
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10036696 [exp]	20.6	0.6754
AT1G06340			Plant Tudor-like protein (.1)		Lus10027325 [exp]	22.2	0.6168
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	23.1	0.6750
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	34.4	0.5997
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10008347 [exp]	43.0	0.5770
AT3G16210			F-box family protein (.1)		Lus10018008 [exp]	46.5	0.6357
					Lus10033100 [exp]	47.8	0.6443
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	77.1	0.6147
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	109.9	0.5626

Compare expression of checked genes

Lus10036469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.