Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35720 383 / 4e-134 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10220 336 / 1e-115 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G65020 336 / 2e-115 ANNAT2 annexin 2 (.1.2) AT5G10230 334 / 1e-114 ANN7, ANNAT7 annexin 7 (.1) AT5G12380 254 / 3e-83 ANNAT8 annexin 8 (.1) AT2G38760 201 / 1e-62 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 192 / 4e-59 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 147 / 5e-42 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041140 [exp] 600 / 0 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10008227 [exp] 474 / 4e-170 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 472 / 4e-169 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10024054 [exp] 308 / 3e-104 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 300 / 6e-101 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10019780 [exp] 251 / 4e-82 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024174 [exp] 236 / 3e-76 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 219 / 1e-69 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 194 / 2e-59 AT2G38760 323 / 2e-109 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095600 [exp] 404 / 3e-142 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.007G092500 [exp] 353 / 2e-122 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 351 / 2e-121 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.003G200700 [exp] 275 / 1e-91 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 263 / 6e-87 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 228 / 3e-73 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.001G024900 [exp] 189 / 3e-58 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.012G041900 [exp] 182 / 2e-55 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 177 / 3e-53 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 169 / 4e-50 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10036470 pacid=23174620 polypeptide=Lus10036470 locus=Lus10036470.g ID=Lus10036470.BGIv1.0 annot-version=v1.0 ATGGCGACACTCATAGTTCCTGAACAGATTCCCGACGTCGCTGAAGATTGCGAGCAGCTCCACAAGGCTTTCTCAGGATGGGGGACTAACGAAAATCTGA TAATCTCAATCCTAGCGCACAGAAACGCAAATCAACGCAAGCTGATCAGGGAGACATACCAGTCAATCAACGGAAACGAGCTGCTGAAGGAATTGGACAA GGAGCTTTCGAGTGATTTCGAGCGGATCGTCCTGATATGGACTCTGAGCCCTTGCGAGCGGGACGCGATCCTGGCGAACGAAGCGACTAAGAAGTGGAGC TCCAGCAATCAGGTTCTGATGGAGATCGCCTGCACGAGGTCAGGCAAGCAGCTGCTGGAGGCGAAGCGGGCCTACCACGACCGGTTCAAGAGGTCGATTG AGGAGGATGTGGGGCAGCACGTGACCAAGGCAGAGTTCCGGAAGCTCCTTTTCTCGCTCGTGGCGTGCTACCGATATGAAGGACCGGAGGTGGACATGAG CGTGGCGAATTGGGAAGCGGGAGTGCTTCATGATTGCTTCGAGAAGAAGGAGTTTGGTGATGATGAGGTTGTCAGGATTCTGTCTACCAGGAGTAGAGCT CAGGTTAATGCTACTCTTAACCAGTATAAGGAAAAATTCGGACATGATGTTCTCGAGGCACTGGAGCCAGACTCCAACGACGATTTGGTCAGTCTTCTGA TTTCGACAATCAAGTGTTTGACTCGCCCTGCAGAGTATTTCGTGGAGATAGTTCACGGGGCGATGGAGAAGACAGGGACGGACGAAGGAGCTCTTACAAG GGTTGTGGCCACCAGAGCCGAGGTTGATCTGAAGATCATCAAAGAAGAGTACCAGCGGAGACACAGTGTACCTCTGGAGAAAGCCATCGCCAAGGACACC TCTCGCTACTACGAAGACATGCTCCTTGCACTAGCTGGCCATCAAGAACACTAA
AA sequence Show only first row Show all	>Lus10036470 pacid=23174620 polypeptide=Lus10036470 locus=Lus10036470.g ID=Lus10036470.BGIv1.0 annot-version=v1.0 MATLIVPEQIPDVAEDCEQLHKAFSGWGTNENLIISILAHRNANQRKLIRETYQSINGNELLKELDKELSSDFERIVLIWTLSPCERDAILANEATKKWS SSNQVLMEIACTRSGKQLLEAKRAYHDRFKRSIEEDVGQHVTKAEFRKLLFSLVACYRYEGPEVDMSVANWEAGVLHDCFEKKEFGDDEVVRILSTRSRA QVNATLNQYKEKFGHDVLEALEPDSNDDLVSLLISTIKCLTRPAEYFVEIVHGAMEKTGTDEGALTRVVATRAEVDLKIIKEEYQRRHSVPLEKAIAKDT SRYYEDMLLALAGHQEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	0	1
					Lus10027530 [exp]	2.0	1.0000
					Lus10016136 [exp]	2.8	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	3.9	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	6.2	1.0000
					Lus10002313 [exp]	6.5	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	6.7	1.0000
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020731 [exp]	7.5	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036896 [exp]	7.7	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	8.5	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	8.7	1.0000

Compare expression of checked genes

Lus10036470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.