Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26480 357 / 1e-125 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 347 / 8e-122 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 346 / 2e-121 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT2G42590 342 / 1e-119 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT3G02520 308 / 3e-106 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT1G78300 304 / 8e-105 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT5G38480 303 / 2e-104 RCI1, GRF3 general regulatory factor 3 (.1.2) AT1G35160 301 / 3e-103 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT4G09000 301 / 3e-103 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT5G65430 290 / 3e-99 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036896 [exp] 348 / 5e-122 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10017650 [exp] 343 / 4e-120 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10029835 [exp] 344 / 6e-120 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10004652 [exp] 343 / 7e-120 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10026660 [exp] 343 / 1e-119 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10020705 [exp] 343 / 2e-119 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 339 / 8e-116 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 331 / 4e-115 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10013908 [exp] 323 / 8e-110 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097500 [exp] 374 / 2e-132 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 368 / 7e-130 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.001G392200 [exp] 351 / 2e-123 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.008G095000 [exp] 351 / 4e-123 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 347 / 8e-122 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.011G110900 [exp] 347 / 1e-121 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.017G113300 [exp] 306 / 2e-105 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.004G101700 [exp] 305 / 7e-105 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.002G099800 [exp] 303 / 2e-104 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 303 / 3e-104 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10036471 pacid=23174498 polypeptide=Lus10036471 locus=Lus10036471.g ID=Lus10036471.BGIv1.0 annot-version=v1.0 ATGGACAAGGCAAGAGAGCAGATGGTGTACTTGGCCAGACTAGCTGAGCAAGCTGAGAGATACGATGAGATGGTTGAAGCAATGAAACATGTTGCAAAGC TAGGATCGGAACTGACAGTGGAGGAGAGGAATCTAGTCTCGGTAGGTTACAAGAACGTGATCGGAACGAGGAGGGCATCGTGGCGTATACTGTCCTCGCT TGAACAGAAGGAAGAATCCAGGGGGAATGAACACAATGCCGAGAGGATCAAAGAATACAGGCAGAGAGTCGAGAACGAGCTCGCGAGGATCTGTAACGAC ATACTATCAGTCATCGATCAGCATCTCATTCCCTCTGCGACCTCTGGGGAGTCGACCGTGTATTACTACAAAATGAAAGGAGACTACTACCGTTATTTGG CTGAGTTCAAAAGTGAAGGTGATCGTAAAGAAGCTGCGGATCAGTCGCTTAAGGCTTACGAGGCTGCCTCTTCCACAGCAGCAGCAGAAATGCCACCTAC GCATCCAATAAGGCTTGGTCTAGCTCTAAACTTGTCAGTCTTCTATTATGAGATTCTCAACTCTCCTGAAAGGGCTTGCCACCTTGCTAAGAAAGCCTTT GATGAGGCAATAGGAGAACTCGATAGTCTAAAAGAAGAATCGTACAAGGATAGTACTCTCATCATGCAGCTCCTTAGGGATAATCTCTCTCTGTGGACTA CTGATCTTCAAGAGGAAGGAGGGGGAAAGCCTAAGGTTGATGAAATTGAAGAGGAGAGGTATGCAGGAAGCAAGTAA
AA sequence Show only first row Show all	>Lus10036471 pacid=23174498 polypeptide=Lus10036471 locus=Lus10036471.g ID=Lus10036471.BGIv1.0 annot-version=v1.0 MDKAREQMVYLARLAEQAERYDEMVEAMKHVAKLGSELTVEERNLVSVGYKNVIGTRRASWRILSSLEQKEESRGNEHNAERIKEYRQRVENELARICND ILSVIDQHLIPSATSGESTVYYYKMKGDYYRYLAEFKSEGDRKEAADQSLKAYEAASSTAAAEMPPTHPIRLGLALNLSVFYYEILNSPERACHLAKKAF DEAIGELDSLKEESYKDSTLIMQLLRDNLSLWTTDLQEEGGGKPKVDEIEEERYAGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	0	1
AT5G01030			Protein of unknown function (D...		Lus10017200 [exp]	1.0	0.9432
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	4.5	0.9240
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	5.3	0.8833
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	6.7	0.9152
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10033324 [exp]	7.2	0.8778
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	7.7	0.9095
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	8.0	0.9111
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	8.9	0.8854
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	14.5	0.8951
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	16.1	0.9077

Compare expression of checked genes

Lus10036471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.