Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09020 972 / 0 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 483 / 2e-159 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT1G03310 302 / 1e-89 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT5G04360 84 / 2e-16 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021586 [exp] 494 / 1e-163 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 295 / 9e-91 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10000661 [exp] 303 / 2e-90 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10027999 [exp] 278 / 4e-81 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10017149 [exp] 101 / 2e-24 AT2G39930 296 / 3e-96 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10038675 [exp] 77 / 3e-14 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100900 [exp] 1035 / 0 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.006G070800 [exp] 499 / 6e-165 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 494 / 2e-163 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G219900 [exp] 314 / 5e-94 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Potri.010G229300 [exp] 71 / 4e-12 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10036474 pacid=23174599 polypeptide=Lus10036474 locus=Lus10036474.g ID=Lus10036474.BGIv1.0 annot-version=v1.0 ATGCCTCGTCTTTCCTCTTCGCCTTTCCCCGCCACCGCCTTCCTTCCGCCCGCCGGTGGATCTCCCCGTCTCTCCGATATGGGATTGAAATTCGCCAAAC AATCTTCCTTCGCCGCCACTGATCCCGGAGGAGGATCTCTCCGTAAGGCATCGAAGAGGGGTCGCTTAAGGAATCGAGTTCCAGGCGTTTCTAGTCAAAG TTCTAGTCAGCGTGTTCTTGAGGAGGAACAAGTTGATAACATGGAACAAGCCAGTCCATCGTCTTTTAAGGTCTTCCCTGGCCAGCCATTTCCGATGGGT GTCTCAGAAGTTGATGATGGGATCAACTTCTCCATTTTTTCCCAGAATGCTACTGCTGTCACTCTTTGTTTATCTCTCCCTCAGAGTGCGGATTATGGAA ACAGAGAAGGTGGTACTATTCAAATGCCTCTGGATCCTCATGTAAATAAAACAGGAGACATTTGGCACATATGTATCGAGGGCTTGCAACGGAGCAATGT GCTGTATGGTTACCGTGTTGATGGGCCCCGTGATTGGAATCAAGGCCTTCGTTTTGACAATGCAAATGTTCTCATTGATCCATATGCTAAGCTTGTTGAA GGCCGCCGACGTTTTGGAGATGCTAGCCAGAAGCTGTCAAACTTTCTGGGAACATATGATTTTGATAGTTCTCCATTTGACTGGGGTAGAAATTATAAGC CTCCAAATATACCAGAGGAAGATATTGTCATATATGAAATGAATGTTCGCGCATTTACAGCTGATGAATCTAGTGGCCTGGACATGAACTTACGTGGAAG TTACCTTGGTATAATTAAGAAGATTCCCTATCTCCTCGAGCTCGGTGTAAATGCCGTGGAGTTGCTTCCTGTGTTCGAATTTGATGAGTTTGAGTTCCAG AGACGCCCAAATCCCAGAGATCACTTGATCAATACATGGGGCTACTCAACAATTAATTTCTTTGCTCCAATGAGTCGCTATGCTAGTGGGGATGGAGGAC CATGCAATGCATCCAGGGAGTTCAAGGAAATGGTTAAAGCGTTGCACAATGCTGGCATTGAGCAGAGCGGTGTAGAATACCATATTGCTGTATATGGGTT TTTACATTGCCCTGGGAGTCTGTGGATAGTGTTCAACAGCACCAGCATAACTTTGCAGGTGATTTTGGATGTCGTCTATAACCATACAAATGAGGCTGAC GATGCTCATCCTTATCCCACTTCATTTCGTGGCATAGACAACAAGGTTTATTACATGATGGACCCGAGTAACAAATCCCAACTGCTGAACTTTTCTGGAT GCGCATTCTTGGGGTATATGCTTTCAAGACTTGCTTCCATTGTGATGCTCATATACAGCATACCTTGTCCTCCAGGAAATACATTGAACTGTAACCACCC TGTCGTCATGGAGCTCATCTTGGACAGCTTAAGGCATTGGGTTTCTGAATACCATGTAGATGGATTCCGATTCGACCTTGCTAGTGTCCTTTGCCGAGGA ACAGATGGTTCCCCCCTTAGTGTGCCTCCAGTTATTAGGGTAAGAAGTGCTGCTGATTTCTCGCGTATATGCGATAGTCTGTGGGCAGAATGGAATGGGA AGTATCGTGATGACATAAGAAGTTATATGAAGGGAGATGCTGGTATGAAAGGGAGCTTTGCTACTCGTGTTTCTGGATCTGCTGATCTGTACAGAGTCAA CAATCGCAAACCATACCATAGTGTAAACTTTGTTATTGCACATGACGGATTCACACTGAATGATCTAGTTTCCTACAACGACAAGCACAACGATGCTAAT GGAGAAGGGGGAAACGATGGGAGCAATGACAACCTCAGTTGGAACTGTGGGGTTGAAGGTGAAACTGATGATCCTGGTGTTAAAGCTGTACGTTCTCGGC AAATGAAGAACTTCCATGTAGCCCTGATGATATCACAGGGAACACCAATGATGCTAATGGGAGATGAGTATGCACATACTCGTTATGGCAACAACAACAG TTATGGACATGACACCTCCCTTAACAATTTCCAGTGGTGTCTGATGGAAACACAAAGGTTGGGTCACTTCAGGTTTTTCTCAGAAATGATTAAGTATCGA CTAACACACGAGATATTCCGGCACAAGAATTTTCTCAGCGATAGAGATGTGACGTGGCATGAAGACAACTGGGGCAATCCTGAAAGCAAGTTCCTTGCAT TTACGCTTCATGATAAGAACGGAGGAGATGTGTATTTGGCGTTCAATGCCCATCACTATTTTGTAAAGGCATCGATACCATCACCTCCAGCAAACAGAAG TTGGCACAAAGTGGTGGATACAAATCTGCCATCTCCAAATGACATTGTGCCTCAAGGAGTCTCGGGTGTTGGCAGCACCTATAACGTGGCTTCATACTCT TCAATCCTCCTTGAAGCCAAATGA
AA sequence Show only first row Show all	>Lus10036474 pacid=23174599 polypeptide=Lus10036474 locus=Lus10036474.g ID=Lus10036474.BGIv1.0 annot-version=v1.0 MPRLSSSPFPATAFLPPAGGSPRLSDMGLKFAKQSSFAATDPGGGSLRKASKRGRLRNRVPGVSSQSSSQRVLEEEQVDNMEQASPSSFKVFPGQPFPMG VSEVDDGINFSIFSQNATAVTLCLSLPQSADYGNREGGTIQMPLDPHVNKTGDIWHICIEGLQRSNVLYGYRVDGPRDWNQGLRFDNANVLIDPYAKLVE GRRRFGDASQKLSNFLGTYDFDSSPFDWGRNYKPPNIPEEDIVIYEMNVRAFTADESSGLDMNLRGSYLGIIKKIPYLLELGVNAVELLPVFEFDEFEFQ RRPNPRDHLINTWGYSTINFFAPMSRYASGDGGPCNASREFKEMVKALHNAGIEQSGVEYHIAVYGFLHCPGSLWIVFNSTSITLQVILDVVYNHTNEAD DAHPYPTSFRGIDNKVYYMMDPSNKSQLLNFSGCAFLGYMLSRLASIVMLIYSIPCPPGNTLNCNHPVVMELILDSLRHWVSEYHVDGFRFDLASVLCRG TDGSPLSVPPVIRVRSAADFSRICDSLWAEWNGKYRDDIRSYMKGDAGMKGSFATRVSGSADLYRVNNRKPYHSVNFVIAHDGFTLNDLVSYNDKHNDAN GEGGNDGSNDNLSWNCGVEGETDDPGVKAVRSRQMKNFHVALMISQGTPMMLMGDEYAHTRYGNNNSYGHDTSLNNFQWCLMETQRLGHFRFFSEMIKYR LTHEIFRHKNFLSDRDVTWHEDNWGNPESKFLAFTLHDKNGGDVYLAFNAHHYFVKASIPSPPANRSWHKVVDTNLPSPNDIVPQGVSGVGSTYNVASYS SILLEAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Lus10036474 [exp]	0	1
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10016012 [exp]	3.5	0.8182
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10040437 [exp]	9.5	0.7683
AT5G13260			unknown protein		Lus10002574 [exp]	10.2	0.7957
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	14.1	0.7720
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	16.2	0.7925
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	17.7	0.7961
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	21.2	0.7591
AT5G23200			unknown protein		Lus10010192 [exp]	21.5	0.7672
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	21.9	0.7677
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	22.3	0.7754

Compare expression of checked genes

Lus10036474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.