Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010342 [exp] 818 / 0 ND / Lus10018952 [exp] 117 / 4e-29 ND / Lus10011266 [exp] 94 / 9e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100700 [exp] 719 / 0 ND / Potri.019G076200 [exp] 135 / 7e-36 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01702 [flax] [poplar] TGT Queuine tRNA-ribosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036475 pacid=23174502 polypeptide=Lus10036475 locus=Lus10036475.g ID=Lus10036475.BGIv1.0 annot-version=v1.0 ATGACGCTTCCTCATTCTGTAGCTCAGACGCCATTGTTTATGCCTGTAGGAACACAAGGAACAATTAAGGGATTGACAACTAGCCAGCTTGAGGAGATTG GTTGTCAAATAATCCTTGGGAATACTTACCATTTGGAGCTACGTCCAACCTCTGAGTTAATAGATGAATTAGGTGGTCTTCATAAATTTATGAATTGGCC TAGAGCACTGCTTACTGATTCTGGTGGCTTCCAAATGGTCTCGCTGTTGCATTTGGCTGATATAACCGAAAATGGAGTCACATTTCAGTCTCCAGTTGAT GGTAAGCCCATGCTTCTAACACCAGAGGAGTCTATTCAAATCCAAAACAGAATCGGTGCAGATATCATTATGGCTCTCGATGATGTGGTAAAGACCACCA TCACTGGACCGCGAATCGAGGAAGCAATGTATCGGACCATTCGATGGATAGACAGGTGCATTGCAGCTCATAAAAGGCCAGACGAGCAGAACTTATTCGC TATCGTTCAAGGCGGTCTGGATCCTGTGTTAAGGGATATATGTGTTAAAGCTTTGACGAAAAGGAATCTACCAGGCTATGCCATTGGTGGCCTTGCTGGC GGGGAAGACAAAGATTCATTTTGGCGCGTTGTTGCTCAGTGTACGGCTTCTTTACCTGAAGACAAACCGCGATATGTGATGGGTGTTGGTTATCCACTTG ACATAGTGGTTTGCAGTGCTTTAGGTGCAGACATGTATGACTGTGTGTATCCCACTCGTACTGCTCGTTTCGGAACAGCTCTTATACCAGAGGGAGTGCT GAAGCTTAAACACAAAGCAATGGCTGAAGATACTCGTCCAATCGATCCCACTTGCGCTTGCATGGTCTGCAAAACCTATTCGCGGGCATATATCCATAGC CTTGTCACCAAAGATGCTATGGGGTCGCAGCTTTTGTCATATCACAATCTGTACTACATGCTGCAGCTTAGTAGAGACCTACACTCTTCAATCCTCCATG GGAGGTTTCCAGAGTTCGTCTGCAACTTCCTGAAGAAAATGTTCCCAGAAGGTGACGTCCCGGAGTGGGTGTGTAATGCCATGGAGGTCGCAGGCGTCGA CATCACAGAATGTTGTTCGGAAGACTTAGTATTGCGGCGCTTTAGTTCGAGCACAACACTAACGAAAAAGGCCACAGACTCTGCAATAGAAGTCGGTTCC TTGAACATTTAG
AA sequence Show only first row Show all	>Lus10036475 pacid=23174502 polypeptide=Lus10036475 locus=Lus10036475.g ID=Lus10036475.BGIv1.0 annot-version=v1.0 MTLPHSVAQTPLFMPVGTQGTIKGLTTSQLEEIGCQIILGNTYHLELRPTSELIDELGGLHKFMNWPRALLTDSGGFQMVSLLHLADITENGVTFQSPVD GKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTIRWIDRCIAAHKRPDEQNLFAIVQGGLDPVLRDICVKALTKRNLPGYAIGGLAG GEDKDSFWRVVAQCTASLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHKAMAEDTRPIDPTCACMVCKTYSRAYIHS LVTKDAMGSQLLSYHNLYYMLQLSRDLHSSILHGRFPEFVCNFLKKMFPEGDVPEWVCNAMEVAGVDITECCSEDLVLRRFSSSTTLTKKATDSAIEVGS LNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036475 [exp]	0	1
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10026902 [exp]	2.0	0.8228
					Lus10010342 [exp]	2.0	0.8434
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	5.5	0.8320
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	6.5	0.8181
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	8.3	0.8272
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	12.4	0.8206
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	13.7	0.7624
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	20.0	0.7492
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	23.7	0.7451
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	23.7	0.7784

Compare expression of checked genes

Lus10036475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.