Plant FIBer expression Database

Lus10036476 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010343
[exp]
159 / 2e-49 AT1G35210 42 / 6e-05 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G161700
[exp]
39 / 0.0005 AT1G35210 50 / 6e-08 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05340 DUF740 Protein of unknown function (DUF740)
Representative CDS sequence
>Lus10036476 pacid=23174464 polypeptide=Lus10036476 locus=Lus10036476.g ID=Lus10036476.BGIv1.0 annot-version=v1.0
ATGCCAAACCAATTACTTCCTCCTCCGCGCCGCCACCGCCGCCGACCAGCCGCCGACAAAACTAGGTGTAGAAAGCATCAGGAGCAGCACCAGCCGCCAG
GTGTCTGCTCAGCTTGTCTCCGGGAAAAGCTCTCGCAGCTCCCATCAGTTGCCAGCTCATCATCGTCGTCCTACTACCGTACGGAGGACACGTCATCTTC
TGCTGCTTCTTCATACTATTCCTCTTCATCGTCTTCTTGCGATTCCTCCACGTGTTCTTCTCCCAGGAAAGGCAGCGGCGGCGGCGGAGTGTTAATGTCT
CTATCGTCTCGGTTGGTAGGGAAGAAGAACAATCGTGTGGACACGACGTCGTTTGTGATGTCGAAAAGCAGATCAATGGGTCTTGGCTGTCATACAAAAG
GTGGTGGAGTTGAGGGGGGGAAGGTGGTCAACAAAGGGTTTTGGTCAAGAGTGCTCCGTCGAGGAAAGCGGCCGTCGACGACGGAGGAGGAGCAAAGGGG
CATAAGACCGCCGACTACTTTGGGTGGGCGTTCGATGACTATGCGGGACGTAGTCGTCCTTCATGCATAG
AA sequence
>Lus10036476 pacid=23174464 polypeptide=Lus10036476 locus=Lus10036476.g ID=Lus10036476.BGIv1.0 annot-version=v1.0
MPNQLLPPPRRHRRRPAADKTRCRKHQEQHQPPGVCSACLREKLSQLPSVASSSSSSYYRTEDTSSSAASSYYSSSSSSCDSSTCSSPRKGSGGGGVLMS
LSSRLVGKKNNRVDTTSFVMSKSRSMGLGCHTKGGGVEGGKVVNKGFWSRVLRRGKRPSTTEEEQRGIRPPTTLGGRSMTMRDVVVLHA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G35210 unknown protein Lus10036476
[exp]
0 1
AT5G39160 RmlC-like cupins superfamily p... Lus10032015
[exp]
1.0 0.9919
AT4G17500 AP2_ERF ATERF-1, AtERF1 ethylene responsive element bi... Lus10015296
[exp]
1.7 0.9872
AT3G48140 B12D protein (.1) Lus10036977
[exp]
3.2 0.9854
AT1G35210 unknown protein Lus10010343
[exp]
4.7 0.9910
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Lus10012583
[exp]
6.0 0.9833
AT3G05950 RmlC-like cupins superfamily p... Lus10032017
[exp]
6.8 0.9797
AT4G36220 CYP84A1, FAH1, ... ferulic acid 5-hydroxylase 1 (... Lus10022303
[exp]
7.7 0.9824
AT4G02340 alpha/beta-Hydrolases superfam... Lus10005858
[exp]
11.8 0.9856
AT1G55230 Family of unknown function (DU... Lus10013749
[exp]
12.2 0.9789
AT1G09090 ATRBOHB-BETA, A... respiratory burst oxidase homo... Lus10029896
[exp]
14.1 0.9802

Lus10036476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.