Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22450 141 / 3e-44 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) AT4G28060 134 / 4e-43 Cytochrome c oxidase, subunit Vib family protein (.1) AT5G57815 134 / 8e-43 Cytochrome c oxidase, subunit Vib family protein (.1) AT1G32710 71 / 3e-17 Cytochrome c oxidase, subunit Vib family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010345 [exp] 154 / 1e-50 AT1G22450 142 / 4e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10008716 [exp] 142 / 9e-45 AT1G22450 173 / 4e-55 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10040123 [exp] 113 / 6e-34 AT1G22450 121 / 9e-36 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10020941 [exp] 108 / 6e-31 AT1G22450 138 / 9e-41 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162100 [exp] 144 / 2e-45 AT1G22450 152 / 4e-47 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Potri.018G099900 [exp] 140 / 2e-45 AT5G57815 147 / 3e-48 Cytochrome c oxidase, subunit Vib family protein (.1) Potri.002G100000 [exp] 112 / 6e-33 AT1G22450 123 / 2e-35 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [flax] [poplar] CHCH PF02297 [flax] [poplar] COX6B Cytochrome oxidase c subunit VIb
Representative CDS sequence Show only first row Show all	>Lus10036478 pacid=23174394 polypeptide=Lus10036478 locus=Lus10036478.g ID=Lus10036478.BGIv1.0 annot-version=v1.0 ATGGCTGATCTTGCCACCGCTGACGCTCTCTCCTCTCTCGAGCTGAAGACAGCACCAGCTGATTACCGTTTCCCGACGACCAACCAAACAAGGCACTGCT TTACTCGTTACATTGAGTTCCATAGGTGCGTTGCTGCAAAGGGAGACGATGCTTCAGACTGCCAGAAGTTCTCCAAATACTATCGCTCTCTTTGTCCTGG TGAATGGGTGGAGAAATGGAATGAGCAGAGGGAGAATGGTACGTTTGCAGGACCTCTGTAG
AA sequence Show only first row Show all	>Lus10036478 pacid=23174394 polypeptide=Lus10036478 locus=Lus10036478.g ID=Lus10036478.BGIv1.0 annot-version=v1.0 MADLATADALSSLELKTAPADYRFPTTNQTRHCFTRYIEFHRCVAAKGDDASDCQKFSKYYRSLCPGEWVEKWNEQRENGTFAGPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10036478 [exp]	0	1
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	4.9	0.8422
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	13.3	0.8462
AT5G20090			Uncharacterised protein family...		Lus10025851 [exp]	13.6	0.8516
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	15.1	0.8455
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	18.5	0.7952
AT1G54120			unknown protein		Lus10013152 [exp]	20.1	0.8292
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	23.2	0.8057
AT2G44610		RAB6, AtRABH1b,...	Ras-related small GTP-binding ...		Lus10019501 [exp]	24.0	0.8010
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	24.4	0.8295
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	25.7	0.8142

Compare expression of checked genes

Lus10036478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.