Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78310 88 / 4e-20 VQ motif-containing protein (.1) AT2G35230 52 / 2e-07 IKU1 HAIKU1, VQ motif-containing protein (.1.2) AT5G46780 49 / 6e-07 VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010346 [exp] 257 / 5e-86 AT1G78310 158 / 8e-47 VQ motif-containing protein (.1) Lus10036480 [exp] 77 / 9e-16 AT1G78310 95 / 8e-22 VQ motif-containing protein (.1) Lus10010347 [exp] 53 / 7e-09 AT1G78310 78 / 4e-18 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162300 [exp] 121 / 2e-32 AT1G78310 142 / 3e-40 VQ motif-containing protein (.1) Potri.002G099900 [exp] 120 / 4e-32 AT1G78310 141 / 2e-39 VQ motif-containing protein (.1) Potri.003G091800 [exp] 52 / 9e-08 AT1G32610 71 / 1e-13 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.001G142400 [exp] 52 / 1e-07 AT2G35230 96 / 5e-22 HAIKU1, VQ motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10036479 pacid=23174491 polypeptide=Lus10036479 locus=Lus10036479.g ID=Lus10036479.BGIv1.0 annot-version=v1.0 ATGGAGAATCATAATCATCCTAATCAGCAGCAGCAGCAGTCGTCTTCATCATCTGGAGCTCTTCCGGATCACTCCAGATCAGATCATTACCTCAAAGGTC TCAACAAGCTCTCCCACAAGATCTCCAAACCTACAACCACCACCGTCGCCAAATCGAATCCTCCTCCTCCTCCTCAGCTTCCTCTCCCTCTGCCCTCAGA GCAGCAGCAGCAGCTACCGCAACCTTCCGCCGGTCAGCAGCAGCAGCAGAGTCAGCCGCCGGTGTACAACATCAACAAGAGCGATTTCCGCGATGTTGTC CAGAAGCTCACCGGATCCCCTGCTCACGACCGCTCCGCCGCTCCTCCACCGCCTATCCATCCGCCAAAGCCGCAGAGCTCCCGATTGCAGCGGATCCGCC CTCCGCCGCTTGCTCATTTGACTAATCGTCCTCCAGCTCCGACCATGTTGTCGCCGCTGCCGCCGTTTCCTGCTGTCCACGTCGCTGCCGCGTCGCCGGT CTACGCTTTCGCTGCCGAGTCGCCGGTCTCCGCTTACATGCGCTATCTCCACAGCTCGATGCCGCCTCCTCCTCCTCCTTCTGGAGCGTTCTCTCCTTTG GCTCCACTGGTTTCACCTCGCTGGAACAGCAACTTACATCCTAACCAATTAGGAGGAGGAGTCGTGGCTTCTTCTCCGACTTCTCAACAGTTCCAGCTCC CGATCTCGCCGCTGCCGTTTGGCTGTTTGAATTCGCCGCGGGGAGCTTACCCGCTGTCTCCGACGGTGGTGCCTCCTGTTCCCAGCCCCAAATGGAAGAG GGTTTGA
AA sequence Show only first row Show all	>Lus10036479 pacid=23174491 polypeptide=Lus10036479 locus=Lus10036479.g ID=Lus10036479.BGIv1.0 annot-version=v1.0 MENHNHPNQQQQQSSSSSGALPDHSRSDHYLKGLNKLSHKISKPTTTTVAKSNPPPPPQLPLPLPSEQQQQLPQPSAGQQQQQSQPPVYNINKSDFRDVV QKLTGSPAHDRSAAPPPPIHPPKPQSSRLQRIRPPPLAHLTNRPPAPTMLSPLPPFPAVHVAAASPVYAFAAESPVSAYMRYLHSSMPPPPPPSGAFSPL APLVSPRWNSNLHPNQLGGGVVASSPTSQQFQLPISPLPFGCLNSPRGAYPLSPTVVPPVPSPKWKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	1.4	0.8669
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	1.4	0.8734
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027158 [exp]	8.9	0.8489
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	9.5	0.8468
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	10.4	0.8355
					Lus10014959 [exp]	15.6	0.7464
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	17.1	0.8627
AT4G13270			Late embryogenesis abundant (L...		Lus10043216 [exp]	18.5	0.7927
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10005088 [exp]	18.5	0.8077
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	21.2	0.8014

Compare expression of checked genes

Lus10036479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.