Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78310 68 / 2e-12 VQ motif-containing protein (.1) AT2G35230 47 / 2e-05 IKU1 HAIKU1, VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010348 [exp] 105 / 2e-26 AT1G78310 55 / 6e-09 VQ motif-containing protein (.1) Lus10010347 [exp] 74 / 8e-16 AT1G78310 78 / 4e-18 VQ motif-containing protein (.1) Lus10036479 [exp] 69 / 5e-13 AT1G78310 153 / 6e-45 VQ motif-containing protein (.1) Lus10010346 [exp] 69 / 6e-13 AT1G78310 158 / 8e-47 VQ motif-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099900 [exp] 72 / 5e-14 AT1G78310 141 / 2e-39 VQ motif-containing protein (.1) Potri.005G162300 [exp] 66 / 8e-12 AT1G78310 142 / 3e-40 VQ motif-containing protein (.1) Potri.003G091800 [exp] 50 / 1e-06 AT1G32610 71 / 1e-13 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.001G142400 [exp] 50 / 1e-06 AT2G35230 96 / 5e-22 HAIKU1, VQ motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10036480 pacid=23174418 polypeptide=Lus10036480 locus=Lus10036480.g ID=Lus10036480.BGIv1.0 annot-version=v1.0 ATGGAGCGGCAATCGTCAGTTGACTCATACAACAGCCGCGGAAGAGATCAGTTCCTGAAGAACTTGAACAAGCAGTCTCAGAAGATCTCGAAACCTAGCT TCTCCTCCTCCACCGTGGTCAACTCCAGAAAGCCCTCTCCTTCTCCGTTTGACCAACAGCAGCAGCCGCCGCCGCCCAATTTCAATCCTCCTAATCCGAC GGCCCAGAATCAGAACCAACCGATGGTGTACAACATCAACAAGAACGATTTCCGAGATGTGGTCCAGCGCCTCACCGGATCCCCCGCCCACGACCGTTTC TCTTCAAATCCTCCGCCGCCGCCTGCGGCGGCGACCAAACCTCCTCCTTCTCAGGTCTCTAGATTGCAGCGAATCCGACCTCCTCCGCTCTCCGGCATCG TCTCCCCCAACCGCCCTCCTTCTCACCGACCCTTTGCACCTACGCCGCCTCCCCAACAGCAGCAGTTGTTCCAACAACACCATCCGCCGCCGCAGCAGCA GCATCCGCAGCCACCTTATCGTCCTCAACCACCGCAGTCACCTTATCGTCCTCAACCACCGCAGTCTTTCAATCAGCAACAATTTCAACCGGGGCCGCCT CCCAACGGATTCTTCCTCCCTCGGCATCCGCCGCCGCCGGGCCCTTTGTCTCCGATGCCTCAGTATCCTCATCCTCCACCTCCGGTGGCGGAGTCTCCTG TTTCGGCTTACATGAGGTACCTCCAGGACTCCATGGATCCCAATAAACAGCAGCAGTTCGGTGGCTTTTCTCCTTTGGCTCCTCTAGTTTCTCCCAGATG GAACAACAACAATCAGCAGCAGCAATTACTTCCATCGCCGCGTATGATGGCTCCTCCGCTTCCTCCTCCGCCGCAGCAGCAGCCGCCGCCGTTCCAGCAT CCGATGTCGCCTATGCCGTACGGGTTTTTGAATTCCCCTCGGTCTCCTTATCCTATGTTTTCGCCAAGTATGCTGCTTTCTCCTTCTTCGTCATTTCCTC CACTTTCCCCAACCATGCCTTTACATAGTCCAAGATGGCTGCTTTCCCCAAATCCTTTCCCTCTATCTCCTACCATGACTTTTCCAAGTCCCAGATGGAG AGGAATGTGA
AA sequence Show only first row Show all	>Lus10036480 pacid=23174418 polypeptide=Lus10036480 locus=Lus10036480.g ID=Lus10036480.BGIv1.0 annot-version=v1.0 MERQSSVDSYNSRGRDQFLKNLNKQSQKISKPSFSSSTVVNSRKPSPSPFDQQQQPPPPNFNPPNPTAQNQNQPMVYNINKNDFRDVVQRLTGSPAHDRF SSNPPPPPAAATKPPPSQVSRLQRIRPPPLSGIVSPNRPPSHRPFAPTPPPQQQQLFQQHHPPPQQQHPQPPYRPQPPQSPYRPQPPQSFNQQQFQPGPP PNGFFLPRHPPPPGPLSPMPQYPHPPPPVAESPVSAYMRYLQDSMDPNKQQQFGGFSPLAPLVSPRWNNNNQQQQLLPSPRMMAPPLPPPPQQQPPPFQH PMSPMPYGFLNSPRSPYPMFSPSMLLSPSSSFPPLSPTMPLHSPRWLLSPNPFPLSPTMTFPSPRWRGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	0	1
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	1.0	0.9502
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	2.0	0.9378
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	2.2	0.9235
AT5G09310			unknown protein		Lus10037415 [exp]	4.2	0.9187
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	4.2	0.9348
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	4.9	0.9160
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	5.9	0.9170
AT2G44430			DNA-binding bromodomain-contai...		Lus10031796 [exp]	12.2	0.8718
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	13.7	0.9070
AT3G12260			LYR family of Fe/S cluster bio...		Lus10026163 [exp]	14.1	0.8860

Compare expression of checked genes

Lus10036480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.