Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78280 1188 / 0 transferases, transferring glycosyl groups (.1) AT5G06550 255 / 5e-75 unknown protein AT5G63080 92 / 2e-19 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G20810 48 / 3e-05 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010350 [exp] 1845 / 0 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1) Lus10029343 [exp] 265 / 5e-78 AT5G06550 730 / 0.0 unknown protein Lus10016202 [exp] 258 / 4e-73 AT5G06550 724 / 0.0 unknown protein Lus10008727 [exp] 62 / 2e-10 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10001249 [exp] 53 / 5e-07 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037290 [exp] 42 / 0.0005 AT3G45880 164 / 7e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099400 [exp] 1309 / 0 AT1G78280 1234 / 0.0 transferases, transferring glycosyl groups (.1) Potri.016G065400 [exp] 252 / 1e-73 AT5G06550 711 / 0.0 unknown protein Potri.015G080400 [exp] 88 / 6e-18 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G016200 [exp] 48 / 2e-05 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10036482 pacid=23174676 polypeptide=Lus10036482 locus=Lus10036482.g ID=Lus10036482.BGIv1.0 annot-version=v1.0 ATGGAGAATCCTCAAGTTGATCCAATGTTCGCCGTAAAAGATCGCAGATCCCACGCGCTCGGCGATCTTCGTGTTATCCCGGACGAACTCATTGCTTCCA TTTTGGAGCATCTCACTCCCAGAGATGTCGCTAATCTCGCTTGTGTCAGCAGTGTGATGTACATATTCTGTAATGAAGAGCCACTGTGGATGAGCTTATG CCTAAGCAAAGCTAGAGGCCAGATACAATACAAAGGTTCCTGGAAGAAGACAACCTTGCATTTAGAGAATGTTGAGGATAAAGGACACAGCGGCAGGCAA ATTGCTTTTGACGGATTCAGCTCCTTGTATTTGTATAGAAGAATGTATAGATGCTATACTACACTGGATAGCTTTACTTTTGATGGGGGGAATGTGGAGA GAAAGAAAGAGATTTCACTGGAAGAGTTTCAGCATCAGTATGACGGGGAAAAACCGGTTTTGCTGGCAGGGTTAGCTGATAGTTGGCCGGCAAGGAGTTC ATGGACAATTGACCAGTTAATGATTAAATACGGTGATAAAGCTTTTAGGATTTCTCAGAGGAGCGCTCACAAATTATCGATGGAATTAAAGGATTATTTG GCTTATGTGAATCTTCAACATGATGAGGATCCCTTGTATATTTTTGATGACAAGTTTGGTGAAACTGTTCCTAGCTTGTTGGAGGATTATAATGTGCCTC CTCTTTTTGAAGAAGACTACTTTGACGTCTTAGATAGAGAGCAGCGACCTCCATTTAGATGGCTTATTATAGGGCCAGAGAGGTCTGGTGCATCTTGGCA TGTTGATCCTGCACTTACAAGTGCCTGGAATACTCTTCTGTGTGGCCGTAAGAGGTGGGCTTTGTATCCTCCTGGAAGGGTCCCTCTAGGTGTTACTGTT CACGTGAATGAGGACGACGGGGATGTTAATATTGACACGCCATCATCACTGCAGTGGTGGCTGGACTTCTATCCACTTCTTGCTGATGAAGACAAACCGA TTGAGTGCACCCAATTACCGGGGGAGACGATCTTCATTCCAAGTGGATGGTGGCACTGTGTTCTAAATCTCGAAACAACAGTTGCTGTTACTCAAAATTT TGTGAACTCCAAAAATTTTGAGTACGTTTGCCTGGATTTGACACCGGGTTATCACCACAAAGGAGTATGCCGTGCTGGATATCTGGCAATTGATGAGGTC ATTCTTGATTATGCTAAACTGAGTATTGAGAAAGATGACCAAAGTTATCCGGATTTGAGAAGGAAAGAAAAGAGACTCAAAATGCAAGATGGTACAGAAG AGCCTGAGTCTGAGATAAGTACCAATTGTGCCTCTACAAGTCATGATCTATGGAGACAAGATTTCTCGTACGATATTGAATTCTTGGCCTCTCTTTTGGA TAAAGAGAGAGACCACTATAATTCTCCATGGAGCTTAGGCAATTGCATTGGACAACGAGAAATGCGAGACTGGTTATATAAACTTTGGATTCATAAACCA GAAGCACGGAATCTCATATGGAAGGGGGCATGTCTTGCACTGAATGCAGAGAAATGGTTTCATTGTCTTGAAGCAGTTTGTACTTTCCACAACTTTCCTC CTCCAACGACTGATGAGAGGCTTCCTGTGGGAACTGGTAGTAATCCGGTATATCTCCTTTCTGACTGCGTAGTTAAAATATTTGTGGAAGGTGGACTTGA AACTTCATTGTACGGGTTAGGGACCGAGCTTCAGTTTTACAGTTTGCTGCACAAAGTAAGCTCACCTCTAAAACATTTTGTTCCGGAAATTTTGACAAGT GGAATTATTTATCTCGAAGACGGAACTCATAAAATCGAGCCATGGGATGGGAAAGGCGTGCCAGAAATAATCACCAGGTCCAATCTGATTTCAGTCGGGT CTGAAGACGACGTTTTCCCTTTTGGATTGTGGAGCAAGAACATGCTTGAATTGAGTAGGGCCAATATGGTAAAGAATGAGTCAATGAATCCCTTCGGATC CACAAAGATATGGCCTTTCATAGTAACAAAGAGATGCAAAGGGAAGATATTTGCTGAACTGAGAGATGAACTCTCGTGGGAAGAGGCTCAAAACCTTGCT TCCTTTCTGGGAGAGCAGCTACGCAACCTTCACCTTCTATCTTGCCCTCCTATAAAAAAAGCTACTCCGCCGGAAATCGATCAGAAAACAGAATCGTCCT TAACAAATGGGAAAGTTGACGATACAGATTATCCGGGAGAGACGGAGATCTTAATCAAAACTCTATGCATGAAAAAGAAACACGTCAAGACCCAGTTAAC AACTTGGGGAGATCCCATTCCTACCGCATTAATCGACAAAGTAGACGACTATCTGCCACATGATTTGTCTGTTTTGTGTCCAACGCATCAGGACGCGATT GGACAGGTTGAAGGATGTCAACTTTTCTCCTGGATACACGCAGACATCATGGATGACAATATCCATATGGAATCATCTATAGCTTCCTTGGATAGAGATT CTTCCGAACATTCTTCACGGGAGAACTCAAGCTCTATAAATGATTGTGGAAAACTGCAGAAATTCTGGTCTCCTGGGCACATTATCGATTTCAGTAATCT CAAAATTGGTGACCGCATCTTGGATATAATACCGATCTACTTGGATGTCTTTAGGGGAGATTCTGGCCTCCTGAAACGATTATTGGATTGCTACAAACTG CCTTTGCTGGTAAAAAGGCAAAGTACATCTGCGCAAGAGAAGTCTGGGCGACTTTCTTACCGTGCCATGTGCTACTGTATACTGCATGAAGAGAATATAC TGGGGGCCATTTTCAGCATGTGGAAGGAACTGAGGGCGGCTAACTCGTGGGAGGAAGTCGAGCTGGCTGTCTGGGGAGAACTGAATAACTATGAGCCTGC TGGAAAGTGA
AA sequence Show only first row Show all	>Lus10036482 pacid=23174676 polypeptide=Lus10036482 locus=Lus10036482.g ID=Lus10036482.BGIv1.0 annot-version=v1.0 MENPQVDPMFAVKDRRSHALGDLRVIPDELIASILEHLTPRDVANLACVSSVMYIFCNEEPLWMSLCLSKARGQIQYKGSWKKTTLHLENVEDKGHSGRQ IAFDGFSSLYLYRRMYRCYTTLDSFTFDGGNVERKKEISLEEFQHQYDGEKPVLLAGLADSWPARSSWTIDQLMIKYGDKAFRISQRSAHKLSMELKDYL AYVNLQHDEDPLYIFDDKFGETVPSLLEDYNVPPLFEEDYFDVLDREQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGRVPLGVTV HVNEDDGDVNIDTPSSLQWWLDFYPLLADEDKPIECTQLPGETIFIPSGWWHCVLNLETTVAVTQNFVNSKNFEYVCLDLTPGYHHKGVCRAGYLAIDEV ILDYAKLSIEKDDQSYPDLRRKEKRLKMQDGTEEPESEISTNCASTSHDLWRQDFSYDIEFLASLLDKERDHYNSPWSLGNCIGQREMRDWLYKLWIHKP EARNLIWKGACLALNAEKWFHCLEAVCTFHNFPPPTTDERLPVGTGSNPVYLLSDCVVKIFVEGGLETSLYGLGTELQFYSLLHKVSSPLKHFVPEILTS GIIYLEDGTHKIEPWDGKGVPEIITRSNLISVGSEDDVFPFGLWSKNMLELSRANMVKNESMNPFGSTKIWPFIVTKRCKGKIFAELRDELSWEEAQNLA SFLGEQLRNLHLLSCPPIKKATPPEIDQKTESSLTNGKVDDTDYPGETEILIKTLCMKKKHVKTQLTTWGDPIPTALIDKVDDYLPHDLSVLCPTHQDAI GQVEGCQLFSWIHADIMDDNIHMESSIASLDRDSSEHSSRENSSSINDCGKLQKFWSPGHIIDFSNLKIGDRILDIIPIYLDVFRGDSGLLKRLLDCYKL PLLVKRQSTSAQEKSGRLSYRAMCYCILHEENILGAIFSMWKELRAANSWEEVELAVWGELNNYEPAGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78280			transferases, transferring gly...		Lus10036482 [exp]	0	1
AT1G78280			transferases, transferring gly...		Lus10010350 [exp]	1.0	0.8894
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	2.0	0.8662
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	5.3	0.8195
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	6.5	0.8170
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	10.0	0.7777
AT2G18750			Calmodulin-binding protein (.1...		Lus10029852 [exp]	10.1	0.7862
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	11.1	0.8219
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	12.7	0.8025
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	13.7	0.8096
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	16.4	0.8185

Compare expression of checked genes

Lus10036482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.