Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08980 347 / 2e-119 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5) AT4G05460 115 / 9e-30 RNI-like superfamily protein (.1) AT5G57900 97 / 6e-23 SKIP1 SKP1 interacting partner 1 (.1) AT4G05497 91 / 2e-21 RNI-like superfamily protein (.1) AT4G05470 80 / 7e-17 RNI-like superfamily protein (.1) AT4G05490 77 / 1e-15 RNI-like superfamily protein (.1) AT4G05475 74 / 6e-15 RNI-like superfamily protein (.1) AT4G30640 74 / 9e-15 RNI-like superfamily protein (.1) AT5G52480 57 / 2e-09 RNI-like superfamily protein (.1.2) AT3G48880 49 / 2e-06 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010351 [exp] 630 / 0 AT4G08980 345 / 4e-119 F-BOX WITH WD-40 2 (.1.2.3.4.5) Lus10023277 [exp] 105 / 7e-26 AT4G05460 247 / 3e-80 RNI-like superfamily protein (.1) Lus10038528 [exp] 102 / 1e-24 AT4G05460 249 / 5e-81 RNI-like superfamily protein (.1) Lus10019104 [exp] 79 / 1e-16 AT5G57900 352 / 4e-122 SKP1 interacting partner 1 (.1) Lus10034452 [exp] 74 / 8e-15 AT5G57900 355 / 3e-123 SKP1 interacting partner 1 (.1) Lus10026115 [exp] 60 / 4e-10 AT4G05460 166 / 3e-49 RNI-like superfamily protein (.1) Lus10008704 [exp] 54 / 3e-08 AT4G03630 162 / 4e-50 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099100 [exp] 404 / 4e-142 AT4G08980 352 / 1e-121 F-BOX WITH WD-40 2 (.1.2.3.4.5) Potri.018G104900 [exp] 80 / 6e-17 AT5G57900 377 / 8e-132 SKP1 interacting partner 1 (.1) Potri.016G019500 [exp] 79 / 9e-17 AT3G48880 76 / 7e-16 RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 41 / 0.0008 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10036483 pacid=23174587 polypeptide=Lus10036483 locus=Lus10036483.g ID=Lus10036483.BGIv1.0 annot-version=v1.0 ATGGATGGTGAAATGGATTCTAATTACAGGCCGTGGGACGAGTTGATTCCGGATGCACTAGGTCTGATCTTCAGCAAGCTTTGTTTGCAAGACATATTGA CAGTGGTTCCCAGGGTGTGCAAATCGTGGAACAGGGTGGTATCGGGGCCGTATTGTTGGCAGGAGATCGACATTGAAGAATGGAGTGAGCAATGTCAACC CGACCAGCTTGATCGCATGCTTGAAATGTTAATTACTCGGAGCTCGGGGTCACTTCGCAAACTCTCCGTCACTTGCTTCCGTAACGATGCCATGTTCCCT TTCCTCGTCGACCATGCCCGGTCCCTTCAGACCCTGAAGCTGCCAAGAAGCAGTTTGAATGACACCATAGTTGAACAGATTGCTGCAAGGCTATCAATGA TAACCTTCTTGGACTTAAGCTACTGCAGCAGAATCGGCGCAGCCTCTCTAGAAGTACTCGGCAATAAGTGCAAATCCCTCGTGGGACTCTGTCGAAACAT GCACCCACTTGACGAAGCAGACAAGGAAGCACAAGAGAACGAGGCTCGAGCCATCGCCACCACGATGCCTAAACTTAAGCACCTCGAGATGGCCTACCAC CTCATAGGCACCGAGAACGCGATGAAGATCCTGTCGAGCTGCACCGATCTCGAGTACATGGACGTGAGAGGGTGTTGGGATGTGGAACTCGACGACAAGG TTATCCAAGAGAAGTTTCCGAAATTGAAAGTATTGGGACCGTTCGTGATGGACTACTACTACGAGATGGACAACTTGGACGACGAGTGCTACGAGTACTC GGATGCTTCCTCGTGGGAGTTTGATGCCGGTTCGATGGGGAGCTTTGAAGGGTACGAGTATGCTAGCTCGGATGAGATGTGGGATGATGAGAGGAGGCTC GAGGAGCTGGAGCTGAGGTTCTATGAAGGGATTGAGGATGCTGGACTTTATGGTTGGCCTGCATCCCCATAA
AA sequence Show only first row Show all	>Lus10036483 pacid=23174587 polypeptide=Lus10036483 locus=Lus10036483.g ID=Lus10036483.BGIv1.0 annot-version=v1.0 MDGEMDSNYRPWDELIPDALGLIFSKLCLQDILTVVPRVCKSWNRVVSGPYCWQEIDIEEWSEQCQPDQLDRMLEMLITRSSGSLRKLSVTCFRNDAMFP FLVDHARSLQTLKLPRSSLNDTIVEQIAARLSMITFLDLSYCSRIGAASLEVLGNKCKSLVGLCRNMHPLDEADKEAQENEARAIATTMPKLKHLEMAYH LIGTENAMKILSSCTDLEYMDVRGCWDVELDDKVIQEKFPKLKVLGPFVMDYYYEMDNLDDECYEYSDASSWEFDAGSMGSFEGYEYASSDEMWDDERRL EELELRFYEGIEDAGLYGWPASP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	0	1
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10010351 [exp]	1.7	0.8091
AT2G33585			unknown protein		Lus10016044 [exp]	10.5	0.6759
AT3G32930			unknown protein		Lus10013750 [exp]	17.0	0.6622
					Lus10014600 [exp]	19.7	0.7170
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	20.4	0.7458
AT5G13470			unknown protein		Lus10005318 [exp]	20.5	0.6792
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	21.2	0.7021
AT3G57930			unknown protein		Lus10031233 [exp]	25.3	0.6690
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	26.9	0.6717
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	29.1	0.7129

Compare expression of checked genes

Lus10036483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.