Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78240 922 / 0 OSU1, TSD2, QUA2 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G13860 639 / 0 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) AT2G03480 607 / 0 QUL2 QUASIMODO2 LIKE 2 (.1.2) AT3G23300 362 / 1e-116 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G04430 355 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G14360 353 / 4e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 343 / 2e-108 Putative methyltransferase family protein (.1) AT5G14430 335 / 3e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G77260 328 / 4e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 324 / 4e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010353 [exp] 1251 / 0 AT1G78240 859 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10036883 [exp] 633 / 0 AT1G13860 887 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10037101 [exp] 629 / 0 AT1G13860 892 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10003656 [exp] 357 / 9e-115 AT5G14430 872 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 352 / 9e-113 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10011815 [exp] 349 / 2e-111 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030155 [exp] 336 / 7e-106 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 336 / 9e-106 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038973 [exp] 328 / 2e-103 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G163900 [exp] 990 / 0 AT1G78240 1028 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G098000 [exp] 990 / 0 AT1G78240 1040 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G094800 [exp] 679 / 0 AT2G03480 873 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.010G159400 [exp] 677 / 0 AT2G03480 885 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.002G036800 [exp] 357 / 1e-114 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 351 / 2e-112 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 338 / 1e-107 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 338 / 1e-106 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 326 / 3e-102 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 325 / 6e-102 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036485 pacid=23174646 polypeptide=Lus10036485 locus=Lus10036485.g ID=Lus10036485.BGIv1.0 annot-version=v1.0 ATGTCGAGGCCTCTCCATCGAGGCATATCTGGGATGCGCAGCAGCGAGGATCTACTATGGGATTCGCAGATGAAAGCTAAAACCCTAAAGGATAAGGAGG ATCTCGCTTCTATAGATAATAATAATAGTTATCTTACACTAAGGTTTCCTTTTCGAGCATTTTTCCAAGACTACAATAACAGTACTATTAGCTCGCCTCC TTCCAAATGCGGATCGGCATTGTTTCTTATTAGATTCAGCTTAGCTGTCATTGTGATTCTAGCTCTTTCCGGATCTTTCTGGTGGACGATCTCCATTTCC ACAAACACCAGAGGGCAGATAGTCCATAGTTACAGGCGGCTTCAGGAGCAGCTTTTCTCGGATTTGTGGGATATTGGGGAGCTTGCTTCATCATCATCAT CATCGAAGTCGAAAGAGGTTGATTTCTGCCCTCTGGATGAATCCGAGAGCTATGTTAATTGCTTCAATGACTCGGTTCGTCAATGTGGGATCGGTTCGTC TGAGAGGAGTTGCTTGCTTCTTCCGCCGGTTAATTATAGGATTCCCCTTCGGTGGCCGACTGGACGGGACGTTATTTGGGTTTCGAATGTTAAGATCACT GCAGATGAGGTGCTTTCGTCTGGTAGCTTCACTAAGAGGATGATGATGCTGGAAGAAGATCAGATCTCGTTTCGTTCAGCGTCTCATATGTTTAATAGTG TTGAAGATTACACGCATCAAATTGCTGAAATGATTGGGCTGAGGAATGAGTCTAACTTCATACAGGCTGGGGTGAGAACGATTCTTGATATAGGCTGTGG TTATGGTAGTTTCGGAGCACATCTCTCCTCAAGCCAGCTTTTGACAATGTGCATTGCGAATTATGAGTCGTCTGGCAGTCAGATTCAACTAACTCTTGAA AGAGGCCTTCCGGCGATGATTGGTTCTTTCTCTTCGAAGCAGTTACCGTATCCTTCTCTTTCCTTTGACATGTTGCATTGCGCAAGATGTGGCTTAGATT GGGACCAAAAAGATGGTATTTACTTGATTGAGGCTGATCGAGTATTAAGGCCAGGGGGCTATTTTGTTTGGACTTCTCCACTTACCAATGCACATAACAA GGAGACTCTACAAAGGTGGAGCTTCATTCGAAATTTTGCCGAAAACATTTGCTGGGTGTTGCTGTCACAAGAAGAAGAAACTGTCGTATGGAGAAAGACC ACCAAAAAGAACTGTTACAGTTCCAGGAAGCAGGGTTCAGGACCTTCTCTTTGCAGCAAACGCTACGATGTCGAGTCTCCCTATTATCAACCCCTTCAAG CATGCATAGGAGGAACTCGGAGTAACCGATGGATTCCTATTGAAGAAAGACCAACTTGGCCTTCTAGATCACATTTGAGCCAGAATGAGCTTGCATTACA TGGAACGAACTCGGAAGACTCTGCCGAGGATGCTGAGAAATGGAAGAAAGCAGTCACCAATTATTGGTCGCTTCTCTCTCCTTTGATATTCTCCGATCAT CCGAAGAGGCCCGGCGAAGAAGATCCTTCGCCGCCTTATAACATGCTCAGGAATGTTCTCGATATGAACGCACATTTTGGAGGACTCAATTCCGCATTGC TCGAGACCGGGAAGTCGGTCTGGGTTATGAATGTGGTTCCGACAACAGCACCCAACTATCTCCCTCTGATACATGATCGCGGATTCGTCGGTGTATTGCA TGATTGGTGCGAGGCATTTCCATCTTATCCCAGAAGCTACGATTTAGTGCATGCTGATGGGCTCTTGTCCCTTGAAACCAGCCGTCACCAACGTAGATGT ACATTGCTTGATCTATTCATCGAGATTGATCGGTTGCTTCGTCCAGAAGGTTGGTTGATCCTCCGGGACACAGCAGCACTGATCGAATCGTCGAGAGCTC AAACGGCGCAGCTGAAGTGGGAAGCTCGGGTGGTAGACATCGATAGCAACAGCGAGGAGAAACTCCTCATCTGTCAAAAGCCTTTCGTCAAGAGACAACC AAGCCAAACATCCTGA
AA sequence Show only first row Show all	>Lus10036485 pacid=23174646 polypeptide=Lus10036485 locus=Lus10036485.g ID=Lus10036485.BGIv1.0 annot-version=v1.0 MSRPLHRGISGMRSSEDLLWDSQMKAKTLKDKEDLASIDNNNSYLTLRFPFRAFFQDYNNSTISSPPSKCGSALFLIRFSLAVIVILALSGSFWWTISIS TNTRGQIVHSYRRLQEQLFSDLWDIGELASSSSSSKSKEVDFCPLDESESYVNCFNDSVRQCGIGSSERSCLLLPPVNYRIPLRWPTGRDVIWVSNVKIT ADEVLSSGSFTKRMMMLEEDQISFRSASHMFNSVEDYTHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFGAHLSSSQLLTMCIANYESSGSQIQLTLE RGLPAMIGSFSSKQLPYPSLSFDMLHCARCGLDWDQKDGIYLIEADRVLRPGGYFVWTSPLTNAHNKETLQRWSFIRNFAENICWVLLSQEEETVVWRKT TKKNCYSSRKQGSGPSLCSKRYDVESPYYQPLQACIGGTRSNRWIPIEERPTWPSRSHLSQNELALHGTNSEDSAEDAEKWKKAVTNYWSLLSPLIFSDH PKRPGEEDPSPPYNMLRNVLDMNAHFGGLNSALLETGKSVWVMNVVPTTAPNYLPLIHDRGFVGVLHDWCEAFPSYPRSYDLVHADGLLSLETSRHQRRC TLLDLFIEIDRLLRPEGWLILRDTAALIESSRAQTAQLKWEARVVDIDSNSEEKLLICQKPFVKRQPSQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	0	1
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10010353 [exp]	1.0	0.9419
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	1.4	0.9324
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	1.7	0.9246
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	2.0	0.9206
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	3.0	0.8998
AT3G49720			unknown protein		Lus10019279 [exp]	4.0	0.9032
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	4.7	0.8747
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	7.7	0.9123
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	9.2	0.8849
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	14.0	0.9044

Compare expression of checked genes

Lus10036485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.