Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34780 271 / 4e-90 ATAPRL4 APR-like 4 (.1.2) AT4G08930 242 / 9e-79 ATAPRL6 APR-like 6 (.1) AT3G03860 136 / 1e-37 ATAPRL5 APR-like 5 (.1) AT5G18120 123 / 8e-33 ATAPRL7 APR-like 7 (.1) AT3G54960 56 / 1e-08 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT2G32920 53 / 1e-07 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT2G47470 50 / 6e-07 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 48 / 5e-06 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT5G60640 47 / 1e-05 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT1G21750 43 / 0.0002 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010354 [exp] 537 / 0 AT1G34780 268 / 2e-89 APR-like 4 (.1.2) Lus10033449 [exp] 377 / 2e-131 AT1G34780 260 / 8e-86 APR-like 4 (.1.2) Lus10020928 [exp] 370 / 1e-128 AT1G34780 259 / 2e-85 APR-like 4 (.1.2) Lus10005703 [exp] 136 / 1e-37 AT3G03860 310 / 7e-106 APR-like 5 (.1) Lus10020283 [exp] 127 / 2e-34 AT3G03860 296 / 3e-100 APR-like 5 (.1) Lus10031522 [exp] 53 / 2e-07 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 53 / 2e-07 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10020691 [exp] 51 / 6e-07 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 50 / 1e-06 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097601 [exp] 342 / 3e-117 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.005G164200 [exp] 341 / 3e-117 AT1G34780 364 / 1e-126 APR-like 4 (.1.2) Potri.013G057100 [exp] 122 / 1e-32 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.019G035700 [exp] 116 / 3e-30 AT5G18120 277 / 4e-93 APR-like 7 (.1) Potri.008G040100 [exp] 53 / 1e-07 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G198300 [exp] 51 / 4e-07 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 50 / 7e-07 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 47 / 7e-06 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.002G082100 [exp] 47 / 2e-05 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.019G082400 [exp] 45 / 4e-05 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10036486 pacid=23174616 polypeptide=Lus10036486 locus=Lus10036486.g ID=Lus10036486.BGIv1.0 annot-version=v1.0 ATGGGGTCTGAGCCTAGGGTTTTACGGAGATGGCTAGGGATTGTGGTTTTGGCGTCGGCAGCACTCTCTCTTTCTGTCAGTGCCGCCAACGGCAGCCCTC GTTCTTCTTTTAGGGTTTCGATTTGCCCTAGACCTTCCATGACAGAGTCGATCTTTCGGTTTCGAGATGGCAATTCTGATTTCATTGATGCTAACTCTCT GGCTTCCTCTTGCGTCAATGAGGGAGACGAAGCATCGTTACAGAAGGCAATGGATTTGGTTCTCAAGGGAGGGTTGGAGTATGTTGCTGTGTTCTTTTAT GCAGCATGGTGTCCTTTCTCCAAGGCATTCAAACCCAAGTTTCCTCTCCTGGCTTCTTTGTATCCATCTATAGCCCACATTGCAGTAGAAGAATCAGCAA TCCGACCAAGCATACTCTCAAAGTACGGAGTTCATGGTTTTCCGACTCTCCTGGTTCTTAATTCTACGATGCGTGTGCGCTATCATGGTTCCCGAACTCT TACCTCTCTTGTTACCTTCTACAATGATATAGTTGGTCTTACCATCACATTACCAGACAAACCTACACTATCCAAAGTCCGGAATCACCCTTCAAGTCAT AGAAAGCCCGACGATTCCAGCTGCCCATTCTCGTGGCCTAGGTCTCCGGAGAAACTGCTAACTCCCGAGACGTATTTGGCTCTGGCCTCGGTGTTCGTGC TCATCAGACTGCTGTACTTGATCTTCCCGACCCTGGTCCGGTTTTCTCGGCTTGTTTGGAGAAGGCAAGTCCGGATACGAAGCATATTGGATCACCCAAG GACCTTTCTGAAAGACGTCGTCCAGGCATTCAGGTGTCTCGTGGATCCTTGCAAGAGAAGCAATCTCCAGGAAGGGGCGATGAATGCCAGAGCTTGGGCT TCGAAATCGCTTGCGACGACTGTGTCGATCGGAGAAGGGAGCACGAGCCGAGCTGCTGCTCAAATACGCGAATGCTGCTGA
AA sequence Show only first row Show all	>Lus10036486 pacid=23174616 polypeptide=Lus10036486 locus=Lus10036486.g ID=Lus10036486.BGIv1.0 annot-version=v1.0 MGSEPRVLRRWLGIVVLASAALSLSVSAANGSPRSSFRVSICPRPSMTESIFRFRDGNSDFIDANSLASSCVNEGDEASLQKAMDLVLKGGLEYVAVFFY AAWCPFSKAFKPKFPLLASLYPSIAHIAVEESAIRPSILSKYGVHGFPTLLVLNSTMRVRYHGSRTLTSLVTFYNDIVGLTITLPDKPTLSKVRNHPSSH RKPDDSSCPFSWPRSPEKLLTPETYLALASVFVLIRLLYLIFPTLVRFSRLVWRRQVRIRSILDHPRTFLKDVVQAFRCLVDPCKRSNLQEGAMNARAWA SKSLATTVSIGEGSTSRAAAQIRECC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	0	1
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	1.0	0.9649
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	1.4	0.9605
AT2G17990			unknown protein		Lus10041920 [exp]	2.6	0.9429
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	3.5	0.9462
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	3.9	0.9550
AT5G47550			Cystatin/monellin superfamily ...		Lus10010495 [exp]	4.1	0.9344
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	4.5	0.9530
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	5.5	0.9370
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	6.6	0.9368
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	7.1	0.9526

Compare expression of checked genes

Lus10036486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.