Plant FIBer expression Database

Lus10036487 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G35220 1061 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010355
[exp]
1397 / 0 AT1G35220 1468 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G100800
[exp]
1153 / 0 AT1G35220 1452 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10036487 pacid=23174596 polypeptide=Lus10036487 locus=Lus10036487.g ID=Lus10036487.BGIv1.0 annot-version=v1.0
ATGCAGCACGTTCCAGCGACGATTGAGGAGCAGTTGATTCTGAAAGCAATAAAAGAGGAAAGTCCATGGGAAAATCTTCCAAAAAGGCTTCAGGCTACTT
TTAGTTCTAAAGAGGAATGGCATAGAAGGATAGTTGAGCACTGCATCAGGAAACGGCTGCAATGGAATGCTTCGTTTGCGCGAAAAGTATGCAAAGAAGG
TGAATATTATGAAGAGATGATGCGTTACTTGCGAAAGAATCTGGCGCTGTTTCCTTATCACCTTGCGGATTATGTTTGTCGTGTGATGAGGATATCACCC
TTCCGATATTACTGTGATATGATCTTTGAGGTTATGAAAAATGAACAACCATATGACAGCATCCCCAACTTCAGTGCTGCAGATGCATTGCGGCTTACAG
GAATTGGTAGAAATGAGTTCATCGATATTATGAACAAATGCAGATCTAAGAAAATTATGTGGAAGCTGAACAAGTCAATTGCAAAAGAACTCTTACCTGC
ACATCCTGCAGACTTTGCGATAGAACCATGGTGGGGTGTCTGTCTTGTCAACTTTACACTGGAAGAGTTTAAGAAACTCTCTGAAGATGAGACTGCGACC
ATAGACAAGATCTGCAAGGAGGAAGCAAATGCGTACATCCTCTTTGATCCTGAGATCGTAAAGGGCATGTACCAAAGAGGACTGATCTACTTTGACGTCC
CCGTTTATGCAGATGACCGTTTTAAAGTTTCCAGGCTGGAAGGCTTTGTTTCGAACAGAGAGCAGTCTTATGAGGATCCTATTGAGGAGTTACTGTATGC
AGTCTTTGTTGTTTCAAGTGAGAATGCTACGGTAGCAGAACTGGCAGCCACCTTACAGGCTGATCTTTCTAAGTTACAAGCAGCTGCATCTTTTGCTTGT
CGATTGGGATGGGCACAGAAACTAATCGACCCGGGGTCTGTTCTTCAAGATGCTAACATGCCTGTCTCTCCAAGAGCCAGTGTCACAGATGAAGATGATG
CTGCTCGTGCTAGTATAAGCTCCACAAGGTCAACTGATGGGGATGGTCAGCAAGAACCTCAAACTTCAGAATACCTTGGTCCCCGTGGGAGCTACACTCG
TGTTGCATTTATCGTTGATGCTAATATAACATCCTATCTTATGATGGGATCAGTTTCCCCTGGCTTGAAATCTCATGCTGTGACATTATACGAAGCTGGC
AAGTTGGGTCATGCTAGCATTGCAGAACTTTGTAAAGATCTCAGTTCATTGGAGGGAGCAAAATTTGAGGGTGAATTACAGGAATTCGCAAATCATGCCT
TTAGCCTCCGTTGCGTCCTAGAATGTCTTCTCTCAGGTGGAATCGCTACTGATGCAGAAGCAGATGAAGTTTGCAATAAGTTGGGTACAGGTGTTTCTAA
CAGTGACGAGTCTACTTTAGTTGCGGAGGTCACTTCTACTGAAAAATCTGGAACTTCCGGTGTTTCCGAAGCTGAAGCAGAAGCGAATGATTCGACCAAG
TCAGAAGTTCCTCTAGATGGCAATGAGTCTGAAGAGGGGACAAAGTCTTATCAGAATGCTGGAAATGATGACAAGGCTATTCCAGTGGAAGGTTCCGATA
TTGGGAAAGGTATAAGAAGGAAAAGAAGGTACCGTGTCGATATTCTGCGCTGTGAAAGTTTGGGTGCCCTAGCACCAGCAACATTAGACAGGCTATTCCG
CCGTGACTATGATATTGTCGTATCCATAGTTCCCCTTCCACATTCCGCAGTTCTTCCCGGACCAAAAGGTCCCCTCCATTTCGGCCCTCCCACTCATTCG
TCACTGACACCATGGATGAAGTTGGTGCTATATTCAACTGTAGGCTGTGGACCCCTTTCGATCGTTCTCATGAAAGGACAGTGTTTACGTTTGCTTCCTG
CACCACTAGCTGGTTGTGAGAAAGCCTTAATATGGTCTTGGGATGATTCCACAGTTGGTGGATTGGGTGGCAAGTTTGAAGGAAATTTGGTGAAGGGAAG
TGTCCTTTTGCATTGTTTGAACTCCTTACTCAAGTACTCAGCTATCCTCGTGCAGCCCCTCAGTAAATCTGATCTCGATCAATCCGGAAGGGTTATTACA
ATGGATGTACCCTTTCCCCTTTAA
AA sequence
>Lus10036487 pacid=23174596 polypeptide=Lus10036487 locus=Lus10036487.g ID=Lus10036487.BGIv1.0 annot-version=v1.0
MQHVPATIEEQLILKAIKEESPWENLPKRLQATFSSKEEWHRRIVEHCIRKRLQWNASFARKVCKEGEYYEEMMRYLRKNLALFPYHLADYVCRVMRISP
FRYYCDMIFEVMKNEQPYDSIPNFSAADALRLTGIGRNEFIDIMNKCRSKKIMWKLNKSIAKELLPAHPADFAIEPWWGVCLVNFTLEEFKKLSEDETAT
IDKICKEEANAYILFDPEIVKGMYQRGLIYFDVPVYADDRFKVSRLEGFVSNREQSYEDPIEELLYAVFVVSSENATVAELAATLQADLSKLQAAASFAC
RLGWAQKLIDPGSVLQDANMPVSPRASVTDEDDAARASISSTRSTDGDGQQEPQTSEYLGPRGSYTRVAFIVDANITSYLMMGSVSPGLKSHAVTLYEAG
KLGHASIAELCKDLSSLEGAKFEGELQEFANHAFSLRCVLECLLSGGIATDAEADEVCNKLGTGVSNSDESTLVAEVTSTEKSGTSGVSEAEAEANDSTK
SEVPLDGNESEEGTKSYQNAGNDDKAIPVEGSDIGKGIRRKRRYRVDILRCESLGALAPATLDRLFRRDYDIVVSIVPLPHSAVLPGPKGPLHFGPPTHS
SLTPWMKLVLYSTVGCGPLSIVLMKGQCLRLLPAPLAGCEKALIWSWDDSTVGGLGGKFEGNLVKGSVLLHCLNSLLKYSAILVQPLSKSDLDQSGRVIT
MDVPFPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G35220 unknown protein Lus10036487
[exp]
0 1
AT2G25800 Protein of unknown function (D... Lus10008430
[exp]
1.0 0.9786
AT1G35220 unknown protein Lus10010355
[exp]
1.4 0.9772
AT2G21390 Coatomer, alpha subunit (.1) Lus10037538
[exp]
1.7 0.9755
AT5G24710 Transducin/WD40 repeat-like su... Lus10040563
[exp]
2.0 0.9681
AT3G50590 Transducin/WD40 repeat-like su... Lus10002967
[exp]
3.2 0.9658
AT4G32640 Sec23/Sec24 protein transport ... Lus10000939
[exp]
3.5 0.9624
AT4G19490 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOM... Lus10023393
[exp]
5.9 0.9608
AT1G52360 Coatomer, beta' subunit (.1.2) Lus10037525
[exp]
6.9 0.9544
AT2G45540 WD-40 repeat family protein / ... Lus10009305
[exp]
7.9 0.9513
AT3G63460 EMB2221 transducin family protein / WD... Lus10016373
[exp]
7.9 0.9335

Lus10036487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.