Plant FIBer expression Database

Lus10036488 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G35220 290 / 2e-92 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010355
[exp]
379 / 4e-126 AT1G35220 1468 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G100800
[exp]
313 / 4e-101 AT1G35220 1452 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10036488 pacid=23174510 polypeptide=Lus10036488 locus=Lus10036488.g ID=Lus10036488.BGIv1.0 annot-version=v1.0
ATGCCTCTTTTCAGTCCGAAGCTATGTAACAATATATGTAAAAGGGTGGTTGCGTCCGAGCTACTGCAATCCGATTCCCTTACTGAACATCACGACACGA
TGCAAGGCTTACGGAAAAGGTTGCGAGATATATGCGCCGAATACTACGCAACAGGTCCGGTTTCCAAGCTCCTTTATCAGAAAGAGCTATCGAAAGATTC
GTCTAAACAACTCCTGATGAACTACGCTAGTGGGAGGTGGAATCCCCTTGTGGACCCTTCTTCTCCTATCTCGGGAGCTTCGAGTGATCTTCAGAGATTG
AAGCTAGCTAATCGTCAGCGCTGCAAGACTGAAGTGCTGAGTTTTGATGGGAGCATTTTACGATCATATGCTCTGACTCCGGTGTACGAGGCTTCTGCGA
AGGCGATTGAAGAAGCCTCGCTCGTCAACACTATAAAAGTCGATCCAAATGAAGCAGATAGTAGGGAAGTACCACTGCCAGGTGTCAACCTTCTTTTCGA
TGGTTGTGAATTGCACCCTTTCGAGATAGGTGCTTGCCTGCAGGCCCGCCAACCTGTCGCTTTGATAGCAGAGGCTGCATTAGCTTCGGCTTCTGGAATC
AAGTAG
AA sequence
>Lus10036488 pacid=23174510 polypeptide=Lus10036488 locus=Lus10036488.g ID=Lus10036488.BGIv1.0 annot-version=v1.0
MPLFSPKLCNNICKRVVASELLQSDSLTEHHDTMQGLRKRLRDICAEYYATGPVSKLLYQKELSKDSSKQLLMNYASGRWNPLVDPSSPISGASSDLQRL
KLANRQRCKTEVLSFDGSILRSYALTPVYEASAKAIEEASLVNTIKVDPNEADSREVPLPGVNLLFDGCELHPFEIGACLQARQPVALIAEAALASASGI
K

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G35220 unknown protein Lus10036488
[exp]
0 1
AT1G67930 Golgi transport complex protei... Lus10007330
[exp]
4.0 0.8966
AT2G21520 Sec14p-like phosphatidylinosit... Lus10040431
[exp]
4.5 0.8798
AT1G62020 Coatomer, alpha subunit (.1) Lus10016481
[exp]
9.9 0.8784
AT1G13560 AAPT1, ATAAPT1 aminoalcoholphosphotransferase... Lus10019149
[exp]
10.3 0.7662
AT5G52180 unknown protein Lus10031574
[exp]
14.3 0.8451
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Lus10039053
[exp]
17.3 0.8445
AT3G59970 MTHFR1 methylenetetrahydrofolate redu... Lus10025610
[exp]
18.7 0.8561
AT5G57460 unknown protein Lus10028963
[exp]
19.0 0.8535
AT1G14290 SBH2 sphingoid base hydroxylase 2 (... Lus10028725
[exp]
21.0 0.8380
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Lus10006396
[exp]
21.8 0.8406

Lus10036488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.