Plant FIBer expression Database

Lus10036489 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G048700
[exp]
44 / 2e-05 AT3G04340 1700 / 0.0 embryo defective 2458, FtsH extracellular protease family (.1)
PFAM info
Representative CDS sequence
>Lus10036489 pacid=23174575 polypeptide=Lus10036489 locus=Lus10036489.g ID=Lus10036489.BGIv1.0 annot-version=v1.0
ATGTCTTCCCTCGCAGTTTCAACTCTATCTTTCCCGCACTTTTCTGCACAAGGAAACTCAAATGATCACATTGTCAGGACGAAACGCTTCCACTCCAGTA
GGAAGCCGTTCAGCAGAACTCGCCGCTTCGTCGTGAATCCTAGATATCGAGTTTTCACCTTCAAGGACGACGATAATAACAAGCCTGCCCAGCCGCTAGC
CAACTACTTGAAAGAGCGGGAGAATTCAGCTGAGAATGGTTGTTTGGTTAGTAGAATTGCTAGACCTGTAGTCTGTGTATTATTCTGCGTCGCTGCCGGC
GTTTTCAAGGCTCGTGTGTTGCCGGCGGCGGCTGCACTTCCTACTTTAACAAAGGAAGCTAGGTTAGAGCAGCTGACCGAAGAGATTGACGAGTCGAAAT
GGAAAGGGCATAAGTACTCGAATTACACTAGAGATCTGCTGAAGCTAGTTTCTAATCGGCTGTTGACTTGCGTAAAGGATGTGAGGAACGGGAATCGGGA
AATGTAG
AA sequence
>Lus10036489 pacid=23174575 polypeptide=Lus10036489 locus=Lus10036489.g ID=Lus10036489.BGIv1.0 annot-version=v1.0
MSSLAVSTLSFPHFSAQGNSNDHIVRTKRFHSSRKPFSRTRRFVVNPRYRVFTFKDDDNNKPAQPLANYLKERENSAENGCLVSRIARPVVCVLFCVAAG
VFKARVLPAAAALPTLTKEARLEQLTEEIDESKWKGHKYSNYTRDLLKLVSNRLLTCVKDVRNGNREM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10036489
[exp]
0 1
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Lus10026424
[exp]
1.0 0.9625
AT3G04340 EMB2458 embryo defective 2458, FtsH ex... Lus10036490
[exp]
1.4 0.9547
AT3G29230 Tetratricopeptide repeat (TPR)... Lus10019797
[exp]
2.4 0.9320
AT4G31210 DNA topoisomerase, type IA, co... Lus10026991
[exp]
3.0 0.9498
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Lus10042232
[exp]
3.9 0.9339
AT3G20540 PolIB, POLGAMMA... polymerase I B, polymerase gam... Lus10040049
[exp]
4.0 0.9471
AT3G11460 Pentatricopeptide repeat (PPR)... Lus10022703
[exp]
4.2 0.9228
AT5G64580 EMB3144 EMBRYO DEFECTIVE 3144, AAA-typ... Lus10033496
[exp]
5.5 0.9223
AT4G23940 FtsH extracellular protease fa... Lus10032404
[exp]
5.7 0.9162
AT1G16480 Tetratricopeptide repeat (TPR)... Lus10008829
[exp]
10.1 0.9156

Lus10036489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.