Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11770 63 / 7e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G06450 55 / 8e-09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G13870 42 / 0.0003 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT2G36110 41 / 0.0003 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010357 [exp] 469 / 6e-170 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10013769 [exp] 65 / 3e-12 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10039164 [exp] 64 / 4e-12 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10029478 [exp] 62 / 2e-11 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 55 / 6e-09 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022556 [exp] 52 / 1e-07 AT4G13870 246 / 1e-80 Werner syndrome-like exonuclease (.1.2) Lus10043049 [exp] 48 / 2e-06 AT2G36110 121 / 4e-34 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029479 [exp] 47 / 3e-06 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021900 [exp] 278 / 1e-94 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.013G049000 [exp] 97 / 2e-24 AT5G06450 / Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G031400 [exp] 64 / 6e-12 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028700 [exp] 57 / 1e-09 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.017G059200 [exp] 56 / 8e-09 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.011G116000 [exp] 52 / 6e-08 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G028501 [exp] 50 / 2e-07 ND / Potri.016G028400 [exp] 42 / 0.0001 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10036491 pacid=23174551 polypeptide=Lus10036491 locus=Lus10036491.g ID=Lus10036491.BGIv1.0 annot-version=v1.0 ATGGACAAGACACTAAGGGGAGCACAGTTCACGATGAGCGACGGGTGCACCGTTGCGACAGAGGTGGTCAACGACGAAGAATCCCACCTATGCCTCTACA TCCTCCTCCAAGACATGTTCAAAGTCGGTGACATGATGGTCGGATTAGACATCGAGTGGGGCTTCAAATCCACCTCTTCTTCTTCTTCTTCTACCTCTGT CAGCCGATCCACCAGCTTCTCCGGCAGTCGTACCGCCACAAACAACATCCCTGTCGACCCAAACCAGCAGGCGTCGCCGACATCGGAACGTAACAGCAAG GCCGGAACAGCTCCACCAGAGCGTAACACCAAGATCGTGGAGCAACACGCCGCCCTAGTAACAATATGCACGAAGGTAGGCTGCGTGCTGATCCGCCTCA ACCCCAAGCTACCTGCATTGTCGCCGTCGTTGAGAAAGTTTCTCGCCATCAAGGAGATACTGTTTGTTGGGGTCCACATAAGGGAGGATCTGCACAGGAT GAAGAAGATGTACGGCGTTGTTGTGAGGAACGCCGTGGAGCTGAGCGACTTGGCGGCCAAGATGAACGATCATCCGAGGTTTCTAGGGTTTAGTGCAAGG GATTTGTGTTCCAAAGTCTGCTCGATAAAGCTGGAGCAGAAGCCGTTTGTGGTGTTGTGGTCGAACTGGTTTGATCCAACACTGAGTAATGAGCAAGTCG AGTCGGCGACAACGGATGCTTATGCGGCTTATAAGACTGGGAGGAAGATTATGGAGGGTGGTAATAGTAGCGTTAAGAAGTTGTTTTATTGA
AA sequence Show only first row Show all	>Lus10036491 pacid=23174551 polypeptide=Lus10036491 locus=Lus10036491.g ID=Lus10036491.BGIv1.0 annot-version=v1.0 MDKTLRGAQFTMSDGCTVATEVVNDEESHLCLYILLQDMFKVGDMMVGLDIEWGFKSTSSSSSSTSVSRSTSFSGSRTATNNIPVDPNQQASPTSERNSK AGTAPPERNTKIVEQHAALVTICTKVGCVLIRLNPKLPALSPSLRKFLAIKEILFVGVHIREDLHRMKKMYGVVVRNAVELSDLAAKMNDHPRFLGFSAR DLCSKVCSIKLEQKPFVVLWSNWFDPTLSNEQVESATTDAYAAYKTGRKIMEGGNSSVKKLFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11770			Polynucleotidyl transferase, r...		Lus10036491 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10014655 [exp]	3.3	0.6825
AT5G20690			Leucine-rich repeat protein ki...		Lus10013165 [exp]	19.3	0.6496
AT3G50120			Plant protein of unknown funct...		Lus10017132 [exp]	25.9	0.5639
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016725 [exp]	34.0	0.6016
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	36.1	0.6077
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	37.1	0.6316
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	44.0	0.6143
					Lus10010411 [exp]	45.6	0.5568
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10029511 [exp]	65.1	0.5507
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000201 [exp]	71.2	0.5787

Compare expression of checked genes

Lus10036491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.