Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60660 306 / 6e-105 unknown protein AT3G55860 40 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010359 [exp] 426 / 2e-152 AT3G60660 385 / 4e-136 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060000 [exp] 316 / 7e-109 AT3G60660 379 / 6e-134 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07160 [flax] [poplar] SKA1 Spindle and kinetochore-associated protein 1
Representative CDS sequence Show only first row Show all	>Lus10036493 pacid=23174618 polypeptide=Lus10036493 locus=Lus10036493.g ID=Lus10036493.BGIv1.0 annot-version=v1.0 ATGGTGCTGAAGGAAGCTGGTTCATCGCTCGATTCTCTGATGTCTCGTTTCAACGCCAGAATCATCGAGCTTCAGGATCTCGTAGTCGCGCGGAACATGT ATCCAGCGAGCAGCGTCACTGATTTATCGGCGATAGACACATCGCTGAAGGCAATGAAGCTTCAGGTTCAGGAAATTAAGGACCGCGTGCGGGAGGAAAC CGAAGCTATCCCTAAAGCTAAGAAGCTTATAGACGTATCGCTACGGCAGCAGAAGAAGTTACAGACTATGTCTGCATATGTTCCAGCACATCTGCCTGCT AGATCAGCCATGTCTAATATTGATGCGAACAGAAGCGTGCCTACGGTAGCCTCTGATCAGCAACCTGGCTACAGATCTCTGACAGTTGACGAGGAGCCTG TGGCATTACCCAAGGAGAAAAAGAGCCGTGGCTCTCCACCCTTGTGGCACATAACTTCGGATGAGCTTGATTCCTTGTCTTCATACATGAGAGGAAGGCT CACTCTAGAAAAGATCAATGCAGCTATTACTGACATGGCAGCATATGCGGATGCCAATGCCCATCTTATTACAGCTCCGAAAAAGAAGCTTGGGGAAAAT GTGTGGGAGAAAGCGTTGGAACTGAGGGATATTGCAATGACTGAAGCCGCCAAGGGAAAGTATTTCTTTCTTGAAACCGATATAAAAGGACCGACCTTGA AACTCGACAACAGTGGAAAATCAATCTTGACTCACTTACTATATTACATTCTCAGAGGCGATTTCGATGTGATTGACAGGTTCTACGCCACCTTGGACGC ATCACTGAAACTCGAATTGGACACCACCGGGTAA
AA sequence Show only first row Show all	>Lus10036493 pacid=23174618 polypeptide=Lus10036493 locus=Lus10036493.g ID=Lus10036493.BGIv1.0 annot-version=v1.0 MVLKEAGSSLDSLMSRFNARIIELQDLVVARNMYPASSVTDLSAIDTSLKAMKLQVQEIKDRVREETEAIPKAKKLIDVSLRQQKKLQTMSAYVPAHLPA RSAMSNIDANRSVPTVASDQQPGYRSLTVDEEPVALPKEKKSRGSPPLWHITSDELDSLSSYMRGRLTLEKINAAITDMAAYADANAHLITAPKKKLGEN VWEKALELRDIAMTEAAKGKYFFLETDIKGPTLKLDNSGKSILTHLLYYILRGDFDVIDRFYATLDASLKLELDTTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60660			unknown protein		Lus10036493 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	6.2	0.8493
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	9.2	0.8186
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	23.4	0.8271
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10024131 [exp]	24.3	0.7973
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	25.3	0.7462
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10035899 [exp]	27.9	0.7682
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Lus10034932 [exp]	36.4	0.8172
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	39.0	0.7829
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	45.1	0.7667
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	60.4	0.8159

Compare expression of checked genes

Lus10036493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.