Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00170 253 / 4e-85 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 201 / 2e-64 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 200 / 2e-64 PVA12 plant VAP homolog 12 (.1) AT2G23830 146 / 2e-44 PapD-like superfamily protein (.1) AT5G47180 147 / 4e-44 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G08820 132 / 1e-36 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT1G51270 134 / 2e-36 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT5G54110 63 / 1e-11 ATMAMI membrane-associated mannitol-induced (.1) AT4G21450 61 / 6e-11 PapD-like superfamily protein (.1.2.3) AT4G05060 57 / 2e-09 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010360 [exp] 349 / 3e-123 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 221 / 3e-72 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 217 / 1e-70 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10028937 [exp] 218 / 2e-68 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10015885 [exp] 187 / 2e-59 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10009279 [exp] 188 / 2e-54 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000591 [exp] 141 / 2e-41 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10033837 [exp] 142 / 3e-39 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2) Lus10000032 [exp] 73 / 3e-16 AT2G45140 148 / 7e-46 plant VAP homolog 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G144800 [exp] 281 / 2e-96 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.003G076100 [exp] 234 / 6e-78 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 229 / 1e-75 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 223 / 1e-73 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 210 / 3e-68 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.013G031400 [exp] 141 / 6e-40 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.003G082500 [exp] 132 / 4e-38 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.005G044900 [exp] 135 / 8e-38 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.001G152100 [exp] 128 / 1e-36 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 121 / 1e-32 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10036495 pacid=23174645 polypeptide=Lus10036495 locus=Lus10036495.g ID=Lus10036495.BGIv1.0 annot-version=v1.0 ATGGCTTCCGGGGATCTTCTCAACATCCACCCCACGGAACTAAAATTTCCATTTGAATTGAAGAAGCAGAGTTCATGTTCTATGCAACTGACTAACAAGT CGGATAGATACGTGGCCTTTAAGGTTAAGACCACGAATCCGAAGAAATACTGCGTTCGGCCCAACAGTGGCATTGTTTTGCCTGGAAGCTCATGCAATGT CACAGTTACAATGCAAGCACAAAAGGAAGCGCCCCTGGAAATGCAGTGCAAGGACAAATTCTTGCTCCAAAGTGTTGCGGCACCTGACGGTGTGATGACC AAAGACATTACTCCAGAAATGTTTGAGAAGGAAGACGGGAAGGTTGTAGAGGAAGTGAAATTGCGTGTTGTGTATATCCCTGCGAATCCTCCTTCGCCGG TCCCTGAAGAATCTGAAGAAGGGTCTCCATCCAGATCTTCAAATGTCGAAGATGGAAATCAGGATGCTGAGTTGCTCAATGCAGTGTCGAGATCTTTTGA CCAGTCTAAGGAGAAATCAACAGAGGCATGGTCCATGATATCAAAGTTAACCGAAGAGAAAAACTCTGCCATACAGCAAAATCAGAAGCTACGACAGGAG CTGGAGCTGATTCGAAAACGAAGCAACACTAACCATGGCGGGTTTTCGTTACTAGTGGTGCTGCTGGTTGGACTGATAGGTATCCTCGCTGGCTATGTAG TCAATAGAACGTAG
AA sequence Show only first row Show all	>Lus10036495 pacid=23174645 polypeptide=Lus10036495 locus=Lus10036495.g ID=Lus10036495.BGIv1.0 annot-version=v1.0 MASGDLLNIHPTELKFPFELKKQSSCSMQLTNKSDRYVAFKVKTTNPKKYCVRPNSGIVLPGSSCNVTVTMQAQKEAPLEMQCKDKFLLQSVAAPDGVMT KDITPEMFEKEDGKVVEEVKLRVVYIPANPPSPVPEESEEGSPSRSSNVEDGNQDAELLNAVSRSFDQSKEKSTEAWSMISKLTEEKNSAIQQNQKLRQE LELIRKRSNTNHGGFSLLVVLLVGLIGILAGYVVNRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	0	1
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10029835 [exp]	1.4	0.8728
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	2.2	0.8880
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006784 [exp]	4.0	0.8324
AT1G18010			Major facilitator superfamily ...		Lus10020560 [exp]	8.1	0.8482
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	9.8	0.8400
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	12.3	0.8427
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	14.1	0.8413
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	14.4	0.8052
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	16.0	0.8187
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	17.2	0.8255

Compare expression of checked genes

Lus10036495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.