Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60720 167 / 4e-50 PDLP8 plasmodesmata-located protein 8 (.1) AT5G37660 107 / 3e-27 PDLP7 plasmodesmata-located protein 7 (.1.2) AT1G70690 106 / 9e-27 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT2G01660 96 / 5e-23 PDLP6 plasmodesmata-located protein 6 (.1.2) AT5G48540 61 / 1e-10 receptor-like protein kinase-related family protein (.1) AT3G22060 60 / 2e-10 Receptor-like protein kinase-related family protein (.1) AT2G33330 54 / 3e-08 PDLP3 plasmodesmata-located protein 3 (.1) AT3G58310 50 / 7e-07 Domain of unknown function (DUF26) (.1) AT1G04520 50 / 9e-07 PDLP2 plasmodesmata-located protein 2 (.1) AT4G23160 45 / 4e-05 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010362 [exp] 374 / 5e-130 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10020814 [exp] 100 / 2e-24 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10016710 [exp] 98 / 2e-23 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10001052 [exp] 64 / 1e-11 AT5G43980 234 / 1e-75 PLASMODESMATA-LOCATED PROTEIN 1A, plasmodesmata-located protein 1 (.1) Lus10025875 [exp] 64 / 1e-11 AT5G48540 261 / 2e-87 receptor-like protein kinase-related family protein (.1) Lus10027145 [exp] 64 / 2e-11 AT3G22060 253 / 8e-85 Receptor-like protein kinase-related family protein (.1) Lus10038227 [exp] 63 / 3e-11 AT5G48540 261 / 1e-87 receptor-like protein kinase-related family protein (.1) Lus10026629 [exp] 50 / 1e-06 AT4G23180 540 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10023726 [exp] 49 / 2e-06 AT1G04520 389 / 2e-136 plasmodesmata-located protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067000 [exp] 172 / 7e-52 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.002G145400 [exp] 153 / 1e-44 AT3G60720 243 / 8e-80 plasmodesmata-located protein 8 (.1) Potri.008G133500 [exp] 109 / 8e-28 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.004G086000 [exp] 101 / 6e-25 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.017G130800 [exp] 99 / 4e-24 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.010G108100 [exp] 97 / 4e-23 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.002G257300 [exp] 67 / 1e-12 AT1G04520 243 / 2e-79 plasmodesmata-located protein 2 (.1) Potri.002G249600 [exp] 65 / 4e-12 AT5G48540 256 / 7e-86 receptor-like protein kinase-related family protein (.1) Potri.007G120600 [exp] 59 / 7e-10 AT3G22060 214 / 2e-69 Receptor-like protein kinase-related family protein (.1) Potri.007G120300 [exp] 57 / 2e-09 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10036497 pacid=23174489 polypeptide=Lus10036497 locus=Lus10036497.g ID=Lus10036497.BGIv1.0 annot-version=v1.0 ATGAATAGAACCCTTCAACACTTAGAGCCACCACCATCATCAACATCAGCATCACAAATAATCTCAACTCCTCTACTTATCGTCATTTCCCTACTAATTA TCATACTATCTCATCAAACCCTAGCCAGCTTCTCACAATACGACATCTTCATCTACGCCACTTGCTCCGAAGCCAAATCCCAACCAAACTCCCTCTTCCA AACCAACCTCAAATCCCTCCTCTATTCACTCTACACCTCCTCCTCCCACTCTCCATACAACACCTCCACCTCCACTGACGGCGGTGGTCCCCTTTACGGC CTCTACCAGTGTCGTGGAGACCTGATCCAGGTTGACTGCTCTCAATGCATTGAGAGTGCTGTCGACCAATTAGGGCTCGAGTGCCCAGACAGCATGTACG GGCAGGTTGACTACATGGGGAAGCCCGACACAAGTGTCAGGTTCAAGAAGTGTAGCACACACCACGAAGAGGATGATGTGGAATTCATCCATCGGAAGGA TGATATGTTGGAAGAGTTGAAGGAGGGGGTGGGGGCCACTGGGTTTAAGGTGAGCACTTGTGGGTTGGTGGAAGCGTATGCTCAGTGTTTGAGTGATTTG GTGAGCTCAGGTGATGACTGTGCGAGTTGCGTGACAGAGGCGGTGGGGAAGTTGAAGCGGTTGCATGGGTCTACGGCGACGGTAGAGGTGTTCTTGGGGA AATGTTATGCTCGGTATTCAACTTTCGGTTATTATGACTTCACTCCTCCAGAGTCCAACAACAACAATGATGGGATGGGGAAGACAGTAACCATTATAGT TGGAGTAGTCGTTGGTTTAGCGATTTTAGTTGTAGTTCTCTTCATGATCTGTAAAAAACTAATCGGTTCGACCACACATTCCCTTGTACTATATAATAAA TTAATATAA
AA sequence Show only first row Show all	>Lus10036497 pacid=23174489 polypeptide=Lus10036497 locus=Lus10036497.g ID=Lus10036497.BGIv1.0 annot-version=v1.0 MNRTLQHLEPPPSSTSASQIISTPLLIVISLLIIILSHQTLASFSQYDIFIYATCSEAKSQPNSLFQTNLKSLLYSLYTSSSHSPYNTSTSTDGGGPLYG LYQCRGDLIQVDCSQCIESAVDQLGLECPDSMYGQVDYMGKPDTSVRFKKCSTHHEEDDVEFIHRKDDMLEELKEGVGATGFKVSTCGLVEAYAQCLSDL VSSGDDCASCVTEAVGKLKRLHGSTATVEVFLGKCYARYSTFGYYDFTPPESNNNNDGMGKTVTIIVGVVVGLAILVVVLFMICKKLIGSTTHSLVLYNK LI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	0	1
AT2G30540			Thioredoxin superfamily protei...		Lus10040899 [exp]	1.0	0.9521
					Lus10042963 [exp]	2.0	0.9474
					Lus10025164 [exp]	3.2	0.9362
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	4.9	0.9330
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	5.5	0.9378
AT4G18340			Glycosyl hydrolase superfamily...		Lus10042825 [exp]	5.7	0.9369
AT5G35525			PLAC8 family protein (.1)		Lus10035039 [exp]	5.8	0.9067
					Lus10024104 [exp]	6.0	0.9217
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	6.2	0.9144
					Lus10009581 [exp]	6.5	0.9128

Compare expression of checked genes

Lus10036497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.