Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18610 566 / 0 Protein kinase superfamily protein (.1.2) AT5G02800 548 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 537 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G07870 507 / 4e-180 Protein kinase superfamily protein (.1.2) AT2G28590 488 / 2e-172 Protein kinase superfamily protein (.1) AT3G20530 470 / 5e-166 Protein kinase superfamily protein (.1) AT3G07070 456 / 6e-160 Protein kinase superfamily protein (.1) AT3G24790 451 / 5e-159 Protein kinase superfamily protein (.1) AT1G20650 446 / 1e-156 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G13190 436 / 2e-152 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041426 [exp] 735 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 628 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 626 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 573 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 564 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 535 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10019897 [exp] 523 / 0 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 522 / 0 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 466 / 5e-164 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215100 [exp] 612 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 593 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 570 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 569 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 563 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 553 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 543 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 507 / 4e-180 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 494 / 2e-175 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 490 / 9e-174 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036499 pacid=23174461 polypeptide=Lus10036499 locus=Lus10036499.g ID=Lus10036499.BGIv1.0 annot-version=v1.0 ATGGGCTGCTTTACCTGTGGTGGAAAGTCACACAAAAAGAATGCCAAGAAACTCCACAGGAAACAACAGCTTCATGATTTCAATCAAACCAAGCTCCAGC AACATAACAACAAGAACAAGCGTGATGATCAGATCCCGTCTTCTTCAGATAAGATAAAGTCAAATATCACCCAAGAGTTGAAGAAGGAACCACTCAAGGA GGAGGGAGGATCAGATCGCATAGCGGCAAACACATTTACATTTCGTGAGTTGGCTGCTGCAACTAAGAATTTTAGGGCAGATTGTCTCTTGGGCGAAGGA GGTTTTGGCCGCGTATATAAAGGGAGATTAGATAGCACCAATCAGGTTGTTGCTATCAAGCAACTTGATCGAAACGGCCTGCAAGGGAACAGGGAATTCT TGGTTGAAGTATTGATGTTAAGCCTCCTTCACCATCCTAACCTAGTGAACTTGATTGGCTATTGTGCTGATGGCGACCAGAGACTGTTAGTATATGAGTA CATGCCATTAGGATCTTTGGAAGACCATCTACATGCTTATCTGAAGGGTTTGTTTTTCTGCAATGCTCTTGGAATTTCAGATCTGCCGCTGGATAAAAGA CCACTTGATTGGAACACAAGAATGAAAATTGCTGCAGGTGCTGCTAAGGGGTTGGAACATTTGCATGATAAGGCTAGACCTCCTGTTATATACCGTGACC TGAAATGCTCAAACATTTTACTGGATGAAGGTTTTCACCCAAAGCTATCCGATTTTGGTTTGGCAAAATTGGGTCCAGTTGGGGACAAGACACATGTTTC TACTAGAGTAATGGGTACGTATGGTTACTGCGCACCAGAATACGCGATGACAGGTCAGCTTACATTAAAATCAGATGTATATAGCTTCGGTGTTGTTCTC CTTGAGATGATTACCGGACGGAAAGCCATTGACAACTCAAGAGCTGCTGGGGAGCGAAATCTGGTCGCATGGGCTCGGCCGTTGTTCAAGGACCGCAGGA AGTTCGGGCAGATGGCAGACCCGTCACTGCAAGGCAATTATCCAGTGAGGGGATTGTATCAAGCTCTTGCAGTGGCAGCAATGTGTGTTCAAGAACAGCC AAATATGAGACCTTTGATAGCTGATGTTGTTACAGCCCTTACATATCTCGCGTCGCAGAAATACGATCCGGACTGTGCAGGAGCTAAAAGATAG
AA sequence Show only first row Show all	>Lus10036499 pacid=23174461 polypeptide=Lus10036499 locus=Lus10036499.g ID=Lus10036499.BGIv1.0 annot-version=v1.0 MGCFTCGGKSHKKNAKKLHRKQQLHDFNQTKLQQHNNKNKRDDQIPSSSDKIKSNITQELKKEPLKEEGGSDRIAANTFTFRELAAATKNFRADCLLGEG GFGRVYKGRLDSTNQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHAYLKGLFFCNALGISDLPLDKR PLDWNTRMKIAAGAAKGLEHLHDKARPPVIYRDLKCSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVL LEMITGRKAIDNSRAAGERNLVAWARPLFKDRRKFGQMADPSLQGNYPVRGLYQALAVAAMCVQEQPNMRPLIADVVTALTYLASQKYDPDCAGAKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18610			Protein kinase superfamily pro...		Lus10036499 [exp]	0	1
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10012102 [exp]	4.7	0.7722
AT3G60800			DHHC-type zinc finger family p...		Lus10032199 [exp]	6.9	0.7659
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	13.4	0.7447
AT2G28370			Uncharacterised protein family...		Lus10021469 [exp]	20.7	0.7440
AT1G55365			unknown protein		Lus10013409 [exp]	23.2	0.6580
AT1G20460			unknown protein		Lus10034569 [exp]	37.1	0.6194
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	38.4	0.6961
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	38.4	0.7357
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	42.7	0.7252
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	46.4	0.6954

Compare expression of checked genes

Lus10036499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.