Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55020 574 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 518 / 8e-179 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 498 / 5e-169 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 91 / 1e-19 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 60 / 1e-09 PAM1 plant adhesion molecule 1 (.1) AT3G02460 50 / 2e-06 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041425 [exp] 721 / 0 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10040349 [exp] 625 / 0 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 624 / 0 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10014020 [exp] 509 / 1e-172 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 92 / 6e-20 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 91 / 8e-20 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10003047 [exp] 58 / 6e-09 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 56 / 3e-08 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215000 [exp] 635 / 0 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 625 / 0 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G133400 [exp] 561 / 0 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 89 / 4e-19 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 88 / 8e-19 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.004G106700 [exp] 52 / 4e-07 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 52 / 5e-07 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10036500 pacid=23174571 polypeptide=Lus10036500 locus=Lus10036500.g ID=Lus10036500.BGIv1.0 annot-version=v1.0 ATGCACGACACAACCCTTCAGTTGGATATTGTCAGGACATTGATGGGCCTTCTTGATGATTATTTTGATGGATATTACTCTGAAGAAATGATAGAGTCTC AGGTTGATCAACTAGTTTTCGAGGAGCTTGTCCGTGAAAGATTTCCTAAACTTGTCAATCATCTGGACTACTTGGGAGTGCAGGTTGCATGGGTTACTGG ACCATGGTTCCTTTCCATCTTTATGAATATGCTTCCCTGGGAAAGTGTTCTTCGTGTATGGGATGTGCTTCTTTTTGAAGGAAACCGTGTCATGTTACTC AGGACAGCACTTGCTTTAATGGAGTTATATGGTACTGGTTGTCATGTAGGCCCTGCATTAGTTACAACAAAGGATGCTGGAGATGCAGTTACTTTATTGC AGTCGCTGGCCAGTTCAACATTTGATAGCAGTCAACTTGTACTAACCGCTTCCATGGGTTTCCAAAATGTTAATGAAGCACGATTACGGGAGTTGAGTGA TAAGCATAGACCAGCTGTTATGGCTGCGCTTGAAGAGAGAACCAAGGGAATTCAAGCTTGGAGAGATTCTAAAGGGTTGGCCTCTAAGCTGTATAATTTC AAGCATGATCCTAAATCAATGTTGGTAGAAGGAAGAATGCAAACATCTGGTGACTTATCTTGTTCAGAGTCTGGATCTACTAATTCAGATGATGTTCTTA TTAGTCTGACAGAGAATGGAGAGATGGATAGTGCTCCAGATCTTCAAGAACAGGTAGTCTGGTTGAAGGTTGAATTGTGCAAGTTACTAGAGGAGAAACG ATCTGCTCTACTGAGAGCGGACGAATTGGAGACAGCTTTGATGGAGATGGTCAAACAGGATAACCGACGGCAACTGAGCGCCAGGGTTGAGCAGTTGGAG CAGGAGATTTCAGATGTGCGGAAAGCACTATCTGAAAAGCAGGAGCAAGAAAATGCCATGATTCAGGTGTTGATGAGGGTGGAGCAAGAGCAAAAAGTAA CAGAAGATGCTCGTAGATATGCGGAGCAGGATGCATCAGCTCAGAGATATGCTTGCCAAGTGCTTCAGGAGAAGTATGAAGAGGCTATGGCATCACTTGG TGAAATGGAGAAACGAGTGGTTATGGCAGAATCAATGTTGGAGGCAACGTTACAATATCAGTCTGGTCAACTGAAAAAACAGCTGTCTTCTCCCAGAGTT CAAGACCCAGAGAAATTGCAACGTGTCAACAGCAATGAAGACTCCGCAAGAAAGTCTGGTTTATTTGGATTCGGATGGCGCGACAAAAATAAGGTTCGTT CTTACTGGTTAATCTTAACTAGGGGGTTGTTTGGTACGGGGAAATTAACTTGA
AA sequence Show only first row Show all	>Lus10036500 pacid=23174571 polypeptide=Lus10036500 locus=Lus10036500.g ID=Lus10036500.BGIv1.0 annot-version=v1.0 MHDTTLQLDIVRTLMGLLDDYFDGYYSEEMIESQVDQLVFEELVRERFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLLFEGNRVMLL RTALALMELYGTGCHVGPALVTTKDAGDAVTLLQSLASSTFDSSQLVLTASMGFQNVNEARLRELSDKHRPAVMAALEERTKGIQAWRDSKGLASKLYNF KHDPKSMLVEGRMQTSGDLSCSESGSTNSDDVLISLTENGEMDSAPDLQEQVVWLKVELCKLLEEKRSALLRADELETALMEMVKQDNRRQLSARVEQLE QEISDVRKALSEKQEQENAMIQVLMRVEQEQKVTEDARRYAEQDASAQRYACQVLQEKYEEAMASLGEMEKRVVMAESMLEATLQYQSGQLKKQLSSPRV QDPEKLQRVNSNEDSARKSGLFGFGWRDKNKVRSYWLILTRGLFGTGKLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	0	1
AT5G01010			unknown protein		Lus10029706 [exp]	3.0	0.8614
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	6.0	0.8308
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	7.7	0.8247
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	9.3	0.8302
AT1G16750			Protein of unknown function, D...		Lus10039917 [exp]	10.5	0.8003
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	11.2	0.8160
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	12.0	0.8133
AT4G00840			DHHC-type zinc finger family p...		Lus10002694 [exp]	13.9	0.8168
AT1G71790			Subunits of heterodimeric acti...		Lus10003086 [exp]	16.4	0.8227
AT4G17420			Tryptophan RNA-binding attenua...		Lus10004739 [exp]	17.8	0.7007

Compare expression of checked genes

Lus10036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.