Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55020 128 / 5e-33 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 120 / 3e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 66 / 6e-12 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041425 [exp] 295 / 6e-94 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10040349 [exp] 176 / 1e-49 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 175 / 3e-49 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10014020 [exp] 63 / 8e-11 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215000 [exp] 166 / 3e-46 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 152 / 2e-41 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G133400 [exp] 71 / 2e-13 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036501 pacid=23174615 polypeptide=Lus10036501 locus=Lus10036501.g ID=Lus10036501.BGIv1.0 annot-version=v1.0 ATGAAGGCCAAGGCGAAGGCGGTAAACCATCTCAGCGGCGGATTTGACCTCAAAAGGTATTGTATGGAAATTACTGTTTACCTACTTACTGTTACTGTGC CTGTTCGATCCGGCAAATTTTCGATGCCGGCTGGTCTCTTGCTCTGGATTTGTTGCTATCTGTTTGAATATGCGGAAGGGGTTTGTAGAATGGATGGAAA GTTGATAAAAAATGTTGGTCTTCTGGACAGGGATGCGTATGGATTTGCAGTCAGGCCGCAACATGTCCAGAGATACAGAGAATATGCTAATATCTATAAG GAGGAAGAGGAAGAAAGGTCTGATAGATGGAACACTTTCTTGGATCGGTTGGCCAATTCTGCCCAACTACCAGCAAATGATTCGTCCTTGAAAGAACCCG GGTCCTTGACTACTGAAGCAACAGAGGCGGAGGTAGATGATAACTTACTGAACGGGATCGATGGAGTCAATCTGAGTGATGAGAACCGTTGCTCTGATGT CTCACATGACGATCTCACTGAAAAGGAGGAGAAACAGACCACAGCTAATAGAAGAATACATAAGATCCAAATTTGGACAGAGACTAGACCATCTCTTCGA GTCATTGAAGATATGATGAGTGTCCGTGTCAAGAAGAAAGTCAATCAATTCAAGGAGCAGCAAGATGATAAGAATGAGAAGCAAAAAAATCAGAGAACGA TACTAAAAGTTTGCCAAGAGACCCTGCATCAACGGAGAAGTGGAAAGGGCAGATTGAGAAGGTCGCAGCAAGCATTGTGCTTCAGTTCTGCATTCTCCAT TGTCCCTGACATGTGCTATCTATGGGATCTCATCCTCTTTCTGTCGGATATAAATGCAGGATTTGCCCCGGACGTTTCCTGGTCATCCTGCGTTGGATAG
AA sequence Show only first row Show all	>Lus10036501 pacid=23174615 polypeptide=Lus10036501 locus=Lus10036501.g ID=Lus10036501.BGIv1.0 annot-version=v1.0 MKAKAKAVNHLSGGFDLKRYCMEITVYLLTVTVPVRSGKFSMPAGLLLWICCYLFEYAEGVCRMDGKLIKNVGLLDRDAYGFAVRPQHVQRYREYANIYK EEEEERSDRWNTFLDRLANSAQLPANDSSLKEPGSLTTEATEAEVDDNLLNGIDGVNLSDENRCSDVSHDDLTEKEEKQTTANRRIHKIQIWTETRPSLR VIEDMMSVRVKKKVNQFKEQQDDKNEKQKNQRTILKVCQETLHQRRSGKGRLRRSQQALCFSSAFSIVPDMCYLWDLILFLSDINAGFAPDVSWSSCVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036501 [exp]	0	1
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	3.9	0.8169
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	4.6	0.7905
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	7.0	0.7598
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	8.7	0.8059
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	13.9	0.7515
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10035450 [exp]	22.7	0.7783
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	22.8	0.7555
AT5G40740			unknown protein		Lus10014617 [exp]	26.1	0.7248
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	27.2	0.7299
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	29.6	0.7680

Compare expression of checked genes

Lus10036501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.