Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54770 156 / 8e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G76460 153 / 2e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 152 / 3e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22910 151 / 4e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G46780 141 / 4e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G33470 138 / 5e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22330 139 / 1e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G78260 133 / 7e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G53680 110 / 5e-30 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G11412 109 / 1e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041423 [exp] 327 / 1e-113 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002684 [exp] 141 / 3e-40 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030202 [exp] 141 / 3e-40 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039151 [exp] 112 / 2e-29 AT1G33470 182 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043016 [exp] 84 / 3e-18 AT3G56860 463 / 1e-160 UBP1-associated protein 2A (.1.2.3.4.5) Lus10032516 [exp] 81 / 1e-17 AT3G56860 405 / 6e-139 UBP1-associated protein 2A (.1.2.3.4.5) Lus10032579 [exp] 80 / 6e-17 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 80 / 7e-17 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 78 / 2e-16 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G216800 [exp] 192 / 6e-61 AT3G54770 216 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G044700 [exp] 190 / 4e-60 AT3G54770 234 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.013G094400 [exp] 153 / 1e-45 AT1G33470 257 / 3e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.019G068400 [exp] 152 / 4e-45 AT1G33470 246 / 7e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G179100 [exp] 145 / 3e-42 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G004600 [exp] 145 / 3e-42 AT1G76460 377 / 9e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G256700 [exp] 144 / 7e-42 AT1G76460 335 / 5e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G098100 [exp] 140 / 2e-40 AT1G78260 164 / 5e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G105101 [exp] 139 / 1e-39 AT2G46780 252 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G022100 [exp] 129 / 2e-36 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10036503 pacid=23174453 polypeptide=Lus10036503 locus=Lus10036503.g ID=Lus10036503.BGIv1.0 annot-version=v1.0 ATGAACAGCAGCAGCAGTACTGATCATTATATAATTAACGGCAGCTCCACCGCCGCCGGGCAGCTTGGAGACACCACGCTGACCAAAGTCTTCGTCGGAG GCTTGGCATGGGAGACTCCAAAGGAGGCCTTGCGGGACCACTTCGACAAGTATGGAGAAATCTTGGAGGCTGTCATCATCTCCAATAAGCTCTCCGGCAG ATCCAAGGGCTACGGCTTCGTGACGTTCAAGGAAGCAGAAGCAGCGAGCAAGGCGTGCGAGGACGCCACGCCGGTCATCAACGGCCGCCGCGCTAACTGC AACCTTGCTTCTCTTGGTGCTCGCCGGACTCCCAGGTCTTCTACTCACGTCCCCGCCGCCGCCACTCCTAACAATTACCAACGTAATCATCACCGTCAAC ACGGATCTAACGTGGTAGGGGGGGCCACGTCAGCAAATAATAATTATCAGCGGCAGCNNNNNNNNTATACCAAGTTGAGCTACGGATCGTCGACGTCGTA CATGGCTCATGTGATGCCTGCTCAGATGTACAATCAGGCGGTGTACCCAGCAGCATTATTCTACCATCAATACCATTCCATGGGACTTCCTTCCGCCGTC GCACACATCTACTCACCGTCTTCCGGCCGCTCCGCGATCGTCTCAAAACCTGCTTCAATGGTGGCTCCTCCTCCTTCCTCCGTTGGTGGTGGTAGAGGCA GCACAGTTGGTGGAGCAGTTGAGAAGCTTTAA
AA sequence Show only first row Show all	>Lus10036503 pacid=23174453 polypeptide=Lus10036503 locus=Lus10036503.g ID=Lus10036503.BGIv1.0 annot-version=v1.0 MNSSSSTDHYIINGSSTAAGQLGDTTLTKVFVGGLAWETPKEALRDHFDKYGEILEAVIISNKLSGRSKGYGFVTFKEAEAASKACEDATPVINGRRANC NLASLGARRTPRSSTHVPAAATPNNYQRNHHRQHGSNVVGGATSANNNYQRQXXXYTKLSYGSSTSYMAHVMPAQMYNQAVYPAALFYHQYHSMGLPSAV AHIYSPSSGRSAIVSKPASMVAPPPSSVGGGRGSTVGGAVEKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	0	1
AT1G74530			unknown protein		Lus10023603 [exp]	1.0	0.7785
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038018 [exp]	11.3	0.6824
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	12.5	0.6877
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	15.7	0.7044
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	16.0	0.7044
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	22.0	0.7364
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	25.5	0.7200
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10042652 [exp]	31.3	0.7039
AT1G48120			hydrolases;protein serine/thre...		Lus10042411 [exp]	31.5	0.6616
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10004497 [exp]	32.7	0.6380

Compare expression of checked genes

Lus10036503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.