Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63220 441 / 2e-156 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041421 [exp] 604 / 0 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040371 [exp] 545 / 0 AT5G63220 432 / 9e-153 unknown protein Lus10023490 [exp] 545 / 0 AT5G63220 429 / 8e-152 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217400 [exp] 486 / 2e-174 AT5G63220 464 / 9e-166 unknown protein Potri.008G044100 [exp] 484 / 2e-173 AT5G63220 462 / 6e-165 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04190 [flax] [poplar] DUF410 Protein of unknown function (DUF410)
Representative CDS sequence Show only first row Show all	>Lus10036505 pacid=23174670 polypeptide=Lus10036505 locus=Lus10036505.g ID=Lus10036505.BGIv1.0 annot-version=v1.0 ATGCCGCGGGAAGGAAGTAGAAGAGTTGCGCTCCCTCCTGTCCAAGAGAATGTCGATAAATTGGCCAAGGTAATAACGGATGGTAACTTTTATGGAGCTC AACAGATGTACAAGTCCATCAGTGCCAGATATGTATCGGCTCAGAGATTTTCTGAAGCTATGGATCTTCTTCACTCAGGAGCCTGCCTTCAGTTGGAAAG TGGCCAGTTGACTTGCGGGTCAGAGCTTGCTGTAATGTTTGTGGAGACACTAGTTAAAGGAAAGGTCCAGACAATCTACAAACTGTTTCCACAGATTCCT GTGCCACAACACCTAGGCGAGGAGGATGATGTTCACCAACTCGCGGAAGCACTTGCTGCTGCTAAAACACGAGTGGAGTGTTGCACGTCATTCTTGAGAG CTGCAATAAAGTGGTCTGCAGAGTTCGGACCTTATAGGAGTGGGAGCCCACAACTACACGTTATGCTAGCAGACTACCTATATTCTGAGTCCCCTGAACT GGACATGGCAAGAGTAACTCATCATTTTGTGAAAGGAGACGAGCCACAAAAGTTCGCCTCCATTTTAGTTAGTTTTATGGGCAAGTGTTATCCCGGTGAA GACGATTTGGCAATTGCAAGGGCCATTCTAATGTACTTATCCATGGGCAACATGAGGGATGCTAATTTTTTGCTGGGTGAAGTAAAGAAGCAGGTGGAAG CTAAGAAACTTGAGTTCCCACAATCAGACTTGATTCATTTCATCTCTTATCTTTTGCAAACGTTGCAGAGAGATGCATACCCACTTTTTAGTATGTTGAG ATCGACATACAAGCCGAGCATAGACAGAGAACCTGCATTCAACGAGTGGCTAGATGAAATTGGGGAGGTTTTCTACGGAGTACAACGCAGGAATCCGCTG CAAGGAATGTTTGGAGACATTTTCAAGAAAACCATGACAACAAAAAACTGGCTTGTATCGGTTGACTCTTCATCCGACATTTTATTGCAAAGATTGGGAG GGATTTGTTACTTTTTTGTAGAATGA
AA sequence Show only first row Show all	>Lus10036505 pacid=23174670 polypeptide=Lus10036505 locus=Lus10036505.g ID=Lus10036505.BGIv1.0 annot-version=v1.0 MPREGSRRVALPPVQENVDKLAKVITDGNFYGAQQMYKSISARYVSAQRFSEAMDLLHSGACLQLESGQLTCGSELAVMFVETLVKGKVQTIYKLFPQIP VPQHLGEEDDVHQLAEALAAAKTRVECCTSFLRAAIKWSAEFGPYRSGSPQLHVMLADYLYSESPELDMARVTHHFVKGDEPQKFASILVSFMGKCYPGE DDLAIARAILMYLSMGNMRDANFLLGEVKKQVEAKKLEFPQSDLIHFISYLLQTLQRDAYPLFSMLRSTYKPSIDREPAFNEWLDEIGEVFYGVQRRNPL QGMFGDIFKKTMTTKNWLVSVDSSSDILLQRLGGICYFFVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63220			unknown protein		Lus10036505 [exp]	0	1
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	1.0	0.9075
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10001912 [exp]	2.8	0.9026
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	5.0	0.8857
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	8.3	0.9037
AT3G52905			Polynucleotidyl transferase, r...		Lus10008496 [exp]	10.2	0.8711
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	10.4	0.9042
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	13.5	0.8715
					Lus10010684 [exp]	14.0	0.8849
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	16.1	0.8765
AT5G10745			unknown protein		Lus10026240 [exp]	16.2	0.8578

Compare expression of checked genes

Lus10036505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.