Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16880 638 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 300 / 2e-90 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 282 / 1e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 278 / 1e-83 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64100 279 / 4e-83 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT3G53700 280 / 1e-82 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 270 / 1e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 264 / 4e-78 RPF2 rna processing factor 2 (.1) AT3G22470 263 / 2e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 257 / 2e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041421 [exp] 1456 / 0 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 297 / 7e-89 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 296 / 9e-89 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 293 / 8e-86 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 289 / 9e-86 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 287 / 3e-85 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 285 / 6e-85 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 281 / 4e-83 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 276 / 1e-80 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217600 [exp] 869 / 0 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 293 / 9e-88 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 289 / 5e-86 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 288 / 1e-85 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 281 / 2e-83 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 271 / 3e-81 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 273 / 1e-80 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 270 / 1e-80 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 276 / 2e-79 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 268 / 6e-79 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036506 pacid=23174572 polypeptide=Lus10036506 locus=Lus10036506.g ID=Lus10036506.BGIv1.0 annot-version=v1.0 ATGGAAGGCGCGACGGGGAAGCCTCCGCCGGCTCCGGTGGCTTCAGCGATCTCGGCGCTCGTCGAAGTGTTGACGAAGATCCTTATCTCTGAGAAAGAGC CGCTTCAGAAGCTAAGCTCCTACATTCCTCACATTTCCACCAATTCCAACCTTCTCTTGTCGCTTCTTTCCTCCAAATCCTTAGCCCGAATGCCTGCTAC TCTCATCGCCTTTCTCAGGTGGTCGCAGTCGCATCTTCCCTCCACATTGGGCCGATCACCGCTCCCTCTGCTCGCCGTTATTCCTTCGCTCATCGCCCAC CACAACTTCGACGACGCCAAAACCCTATTGACATCCTTTATCGCCTCTGATAAGCAGGGGACGCTTCACAAGCACATCCTCCACCCGGACAGTAGAACTC CGCTCTCCAGGGCTGTTTATGATCTGTCTATTGGAGCTTATGTTGCAGCAGGTAGGCCTCATCATGCCGCCAATATCTTCAAGAAGATGAAGCGCCTTCG CCTCAAGCCTAATTTGTTAACTTGTAACACTTTGCTGAATGCTCTGGTGAGATATCCTTCTTTACATGCAGTTTCCTTGTCAAAGACCGTTTTGGTAGAT GCGATTAGGCTTGGTGTTAAGGTTAACACCAACAGTTTCAATATTGTTGTAAAGGGGTGTTGTTTAGAAAGCAAGTTTGAGGAGGCACTCGATATTGTAG ATAAAATGGGGGATTATGGGTGTTCACCCGACAATATCACGTACAACACCATACTTGATGGGATGTGTAAGAAGGGGAAGCTAAGTGAGGCTAGGAATTT GTTGCTGGACATGAAAAGTAAGGACTTGTTTCCTGACAGGAATACATTTAACATTCTCATCTCTGGGTATTGCAAACTAGGGCGATTGAAGGAGGCAGGA AATGTGCTTGAGTTGATGACAATGAATAAAGTCTCTCCAGATATGTGGTCATATAACATATTGATTGATGGACTTTGTAAAGTGGGCAGAACCAGTGAGG CATTTCAGTTAAGGGATGGAATGGAGAAGCTCAAGTTGTTTCCAGATGTCGTTACTTATAATACCTTAATTAACGGGTGTTTCAAATTCGGGAGTAATGT AGAAGCATTTCGTTTAGTTGAAGACATGGAAGAGAAGGGACTAAAGCCAACTGCTATTACCCATAATACACTGGTTAAATGGTTTGTTAAGGAAGGAAAG ATGGACGAAGCAGCAAAAGCTGTTAGGAAGATGGAAGAAAATGGGTTTTCACCAGATTGTATTACTTACAATACTCTGATAGCTGGCTATTGCAGTACAG GCAAGATGGATGAAGCATTTAGCGTGATGCATGATATGAATAAGAAACCGGTGAAGATGGATAGCATCACCCTTAACACAGTTCTCCATGCTCTTTGTCT GGAGAAGAAGCTTGATGAGGCATATGACTTACTTTGTAGTGCCAGGATACGAGGTTACTTGGTTGATGAGGTTAGTTATGGTACTCTAATAAATGGATTT TCCAAGAATGAACAGTTTCCTAAAGCCTTCAAGCTGTGGGGTGAAATGAAGGACAAAAAGATCAGTCCAAGTGTCTTCACCTATAACTCCATGATAGCAG CGTTTTGCCGCACTGGGAAGACTGACAAAGCAATAGATTTACTGAATGAACTCTTAGGAAATGGGTTGTTTCCAGATGAAACTACCAACAATACCATTAT ACATGGATACTGCTGGGAAAACCAAATTGAGAAGGCGTTTCAGTTCCATAACAAAATGGTTGACAATTCTTTCAAACCTGATGTGTTCACTTGTAACATT CTTCTTCGTGGTCTTTCTACTGGAGGTATGCTTGATAAGGCTCTTAAACTTTTCCATACATGGATGTCAAAGGGGAAACAAGTTGACTTAGTTTCCTACA ATACTGTTATCTCAAGCCTGTGTAGAGTAAGGAGATTTGACGAAGCATTTACTCTTTTTGATGACATGGTAGAGAAGGGACTGGATCCTGATTGCTATAC ATATAATGCTATCATCGGAGGTCTAACTGATGCAGGTAGGATTGATGATTTTGAGGATTTCGTCTCAAAACGACTTAAGAAGGATCATGATTTTGAGGAT TTTGTCCCAAAACGACTTAAGAAGGATCATGTAGATGCTCTGTCTTTACAATTGGACAGGACACAGGAAGAGGGTAACATCAAGACCTGTCTCGAAATGG ACCAAAGTTCCATTTCTTACTCTGAGAAGATAAGTGAGTTATGTGCTGACGGGAAATACAAGGACGCACTTAAACATTTTCAAGAATCTAGAGAAAAGAG TATCATGCTACACAAATCAACTTATATTCATTTAATGAGTGGACTTATTAGAAGGAGAAAAAGAACATCAGAAGCAGCGACACTATCGTAG
AA sequence Show only first row Show all	>Lus10036506 pacid=23174572 polypeptide=Lus10036506 locus=Lus10036506.g ID=Lus10036506.BGIv1.0 annot-version=v1.0 MEGATGKPPPAPVASAISALVEVLTKILISEKEPLQKLSSYIPHISTNSNLLLSLLSSKSLARMPATLIAFLRWSQSHLPSTLGRSPLPLLAVIPSLIAH HNFDDAKTLLTSFIASDKQGTLHKHILHPDSRTPLSRAVYDLSIGAYVAAGRPHHAANIFKKMKRLRLKPNLLTCNTLLNALVRYPSLHAVSLSKTVLVD AIRLGVKVNTNSFNIVVKGCCLESKFEEALDIVDKMGDYGCSPDNITYNTILDGMCKKGKLSEARNLLLDMKSKDLFPDRNTFNILISGYCKLGRLKEAG NVLELMTMNKVSPDMWSYNILIDGLCKVGRTSEAFQLRDGMEKLKLFPDVVTYNTLINGCFKFGSNVEAFRLVEDMEEKGLKPTAITHNTLVKWFVKEGK MDEAAKAVRKMEENGFSPDCITYNTLIAGYCSTGKMDEAFSVMHDMNKKPVKMDSITLNTVLHALCLEKKLDEAYDLLCSARIRGYLVDEVSYGTLINGF SKNEQFPKAFKLWGEMKDKKISPSVFTYNSMIAAFCRTGKTDKAIDLLNELLGNGLFPDETTNNTIIHGYCWENQIEKAFQFHNKMVDNSFKPDVFTCNI LLRGLSTGGMLDKALKLFHTWMSKGKQVDLVSYNTVISSLCRVRRFDEAFTLFDDMVEKGLDPDCYTYNAIIGGLTDAGRIDDFEDFVSKRLKKDHDFED FVPKRLKKDHVDALSLQLDRTQEEGNIKTCLEMDQSSISYSEKISELCADGKYKDALKHFQESREKSIMLHKSTYIHLMSGLIRRRKRTSEAATLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10036506 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	2.4	0.9530
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	2.4	0.9528
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	4.9	0.9516
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	6.3	0.9496
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	7.2	0.9507
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Lus10026334 [exp]	8.0	0.9188
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	8.2	0.9155
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10011489 [exp]	8.8	0.9416
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	9.5	0.9265
AT3G14120			unknown protein		Lus10037684 [exp]	9.9	0.9296

Compare expression of checked genes

Lus10036506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.