Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35795 142 / 5e-45 Chaperone DnaJ-domain superfamily protein (.1) AT3G09700 137 / 1e-42 Chaperone DnaJ-domain superfamily protein (.1) AT5G03030 136 / 1e-42 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041420 [exp] 162 / 4e-52 AT2G35795 194 / 2e-65 Chaperone DnaJ-domain superfamily protein (.1) Lus10040376 [exp] 149 / 2e-44 AT5G03030 184 / 6e-58 Chaperone DnaJ-domain superfamily protein (.1) Lus10023494 [exp] 112 / 1e-33 AT5G03030 135 / 3e-43 Chaperone DnaJ-domain superfamily protein (.1) Lus10015065 [exp] 87 / 4e-23 AT2G35795 118 / 3e-36 Chaperone DnaJ-domain superfamily protein (.1) Lus10019915 [exp] 91 / 5e-22 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026485 [exp] 80 / 4e-19 AT1G09080 124 / 2e-36 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G131200 [exp] 143 / 2e-45 AT2G35795 195 / 2e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G043500 [exp] 142 / 5e-45 AT2G35795 179 / 4e-60 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G038800 [exp] 116 / 1e-34 AT2G35795 160 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10036507 pacid=23174449 polypeptide=Lus10036507 locus=Lus10036507.g ID=Lus10036507.BGIv1.0 annot-version=v1.0 ATGCAGGCATCACGATGTGGCTGTAGTTTAGTGGCTACACCTTTCTTGGCTGGAGTTGCAGTTGCAGCTGCTGCTCTTGGAGGAAGATACGGAATCCAGG CATGGCAAGCATTCAAGGCTCGTCCACCGAAAATGCGTAGATTCTACGATGGTGGATTCCAGGCTAAGATGCCAGGAGAGAGGCCGCTCTTATTCTTGTT AAAATCAGTTGGAAGCGAATGGATGATAGTGTTGATGTTATTCGACAGGGAAAGTGCGACAGCGGAGAAGGTGAAGGAAGCGCATAGAAGAGTAATGGTA GCAAACCATCCAGATGCAGGTGGTAGCCATTACCTAGCTTCCAAGATCAATGAAGCCAAAGATGTGATGCTAGGAAAGACTAAGGGGACTGGTTCTGCTT TCTGA
AA sequence Show only first row Show all	>Lus10036507 pacid=23174449 polypeptide=Lus10036507 locus=Lus10036507.g ID=Lus10036507.BGIv1.0 annot-version=v1.0 MQASRCGCSLVATPFLAGVAVAAAALGGRYGIQAWQAFKARPPKMRRFYDGGFQAKMPGERPLLFLLKSVGSEWMIVLMLFDRESATAEKVKEAHRRVMV ANHPDAGGSHYLASKINEAKDVMLGKTKGTGSAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10036507 [exp]	0	1
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	1.7	0.7884
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	10.1	0.7664
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10000069 [exp]	12.5	0.7008
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	12.8	0.7603
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10014319 [exp]	14.8	0.7293
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	18.0	0.7614
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	25.2	0.7248
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10043133 [exp]	25.8	0.7465
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	28.0	0.7543
AT5G63905			unknown protein		Lus10007744 [exp]	28.6	0.7243

Compare expression of checked genes

Lus10036507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.