Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 284 / 1e-90 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 277 / 3e-88 IQD3 IQ-domain 3 (.1) AT3G09710 230 / 5e-70 IQD1 IQ-domain 1 (.1.2) AT2G26410 189 / 9e-54 IQD4 IQ-domain 4 (.1) AT2G33990 120 / 5e-31 IQD9 IQ-domain 9 (.1) AT3G22190 114 / 3e-27 IQD5 IQ-domain 5 (.1.2) AT3G15050 107 / 3e-26 IQD10 IQ-domain 10 (.1) AT2G26180 110 / 5e-26 IQD6 IQ-domain 6 (.1) AT3G59690 104 / 7e-24 IQD13 IQ-domain 13 (.1) AT1G72670 99 / 2e-22 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041419 [exp] 627 / 0 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 293 / 3e-94 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 295 / 2e-93 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 211 / 1e-64 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 115 / 1e-27 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10015300 [exp] 112 / 2e-27 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10013522 [exp] 114 / 4e-27 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10025425 [exp] 110 / 1e-26 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10025593 [exp] 112 / 4e-26 AT3G59690 498 / 1e-172 IQ-domain 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G218100 [exp] 464 / 2e-160 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 348 / 3e-115 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 342 / 7e-113 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 126 / 1e-31 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.004G053000 [exp] 122 / 3e-31 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.006G226600 [exp] 125 / 6e-31 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.019G095700 [exp] 124 / 2e-30 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.011G063200 [exp] 118 / 2e-29 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.009G015800 [exp] 119 / 4e-29 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.013G127200 [exp] 120 / 5e-29 AT3G59690 447 / 5e-153 IQ-domain 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10036508 pacid=23174450 polypeptide=Lus10036508 locus=Lus10036508.g ID=Lus10036508.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAATCAAGTTGGTTTTGCTCGTTAGCTCTCAGTTCTTCTAAGAGATCAAATTCAAAGAAGGGATTTGGCACGTCCAAGAGTTTGGATTCGA TTGTCACGTCGTACGAAGATCTTGCTCCATTTGCTGTTCCTACCACCCCACCAGCTCTTGCAGCCCCTCCTCCGCCGCCACCTCCACCTCCATTGCGGCC ATCAGCACCCGCCGATGTGAAATTGAGTAGTGGAGCTGAGGATGAGCAGAGGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCACGTCG GAGGTGCCACCCGCTGCGGGAGCTGAGGCGGCTGTTGCAGCTGCCCAAGCTGCAGCTGAGGTCGTTCGACTTACAACTGCAGTTCGTAGCTCTGGAAAAC CTAAGGAAGAGATAGCAGCAATCAAGATACAGACTGCATTTAGAGGTTACATGGCTAGAAGAGCGCTACGGGCATTGAGAGGGTTGGTGAGATTGAAAAC GTTGTTGCAAGGGCAATCTGTGAAAAGACAAGCAAATTCAACGTTACGAGCTATGCAGACTCTTGCTCGGTTGCAGTCTCAAATCCGGGTAAGGAGAATC AGGATGGCAGAGGAAAACCAGTCTCTCCAGCGACAGATCCAACATAAACATGAAAAGGAGCTTGAGAGGTTAACGTCTTCTGTTACTGGAGCAGAATGGG ATGACAGCATGCAATCAAAACAACAAATTGAAGCCAGCTTACTACACAGGCAAGAAGCTGCAGTTAGGAGAGAAAGAGCATTGGCTTATGCATACAGTCA TCAGCAAACATGGAAGAAGTCGTCGAAAAACGGGACAGCCACATTCATGGACCCGAACAATCCACACTGGGGTTGGAGTTGGTTAGAGAGATGGATGGCA GCAAGGCCATGGGAGAGCACAAGTGGAGTGGATAGCAACAATGACCAGGCATCTCTCAAGAGCGCAATAAGTCGAACAGTATCTCTCGGTGAAATCAGCA GAAGCTACTCTCGTCGGGACCTACACTACAACAACAAGGCTTCCCCAAGTGGCCAAAGATCAAGCAGGCCTCCAAGTCGTCAGTCACCTTCAACTCCAGG TTCAAAGGCTCCATCTTTTGCATCAGTAACTGGGAAAATGAAAGGACCGAGCCCTAGGGGAAGCAGTAGTACTTGGGGCGGCGATGATGATGATGATTCG AGGAGCATGTTTAGCGTCCAGTCTGAGCGATACAGGAGGAGGCACAGCATAGCAGGGTCATCGGTCAGAGATGATGAGAGCCTTGGAAGCTCACCTTCAG TGCCAAGTTACTTGGGGGTTACACAGTCTGCAAAGGCCAAGTCGCGGTTTTCGGGTCTAATGGGGTTGGACAAGAAGGGTGATCCGGATAAAGCATCTGT TGCATCAGCAAAGAAGCGTCTCACCTTCTCTCCTTCATCGGCTGGACTGAGGAGACATTCAGGTCCTCCTAAGATCGATTCGACTCGGGTGAAGAAGCAT GCATAA
AA sequence Show only first row Show all	>Lus10036508 pacid=23174450 polypeptide=Lus10036508 locus=Lus10036508.g ID=Lus10036508.BGIv1.0 annot-version=v1.0 MGKKSSWFCSLALSSSKRSNSKKGFGTSKSLDSIVTSYEDLAPFAVPTTPPALAAPPPPPPPPPLRPSAPADVKLSSGAEDEQRKXXXXXXXXXXXXCTS EVPPAAGAEAAVAAAQAAAEVVRLTTAVRSSGKPKEEIAAIKIQTAFRGYMARRALRALRGLVRLKTLLQGQSVKRQANSTLRAMQTLARLQSQIRVRRI RMAEENQSLQRQIQHKHEKELERLTSSVTGAEWDDSMQSKQQIEASLLHRQEAAVRRERALAYAYSHQQTWKKSSKNGTATFMDPNNPHWGWSWLERWMA ARPWESTSGVDSNNDQASLKSAISRTVSLGEISRSYSRRDLHYNNKASPSGQRSSRPPSRQSPSTPGSKAPSFASVTGKMKGPSPRGSSSTWGGDDDDDS RSMFSVQSERYRRRHSIAGSSVRDDESLGSSPSVPSYLGVTQSAKAKSRFSGLMGLDKKGDPDKASVASAKKRLTFSPSSAGLRRHSGPPKIDSTRVKKH A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	0	1
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	2.0	0.8658
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	2.4	0.8641
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	3.9	0.8629
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	9.2	0.8375
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	9.2	0.8499
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	12.0	0.8387
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	12.0	0.8336
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	14.5	0.7841
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10021500 [exp]	15.0	0.8140
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	15.4	0.8110

Compare expression of checked genes

Lus10036508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.