Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26430 373 / 2e-128 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT4G19600 96 / 3e-21 CYCT1;4 Cyclin family protein (.1) AT5G45190 94 / 1e-20 Cyclin family protein (.1.2) AT1G35440 79 / 1e-16 CYCT1;1 cyclin T1;1 (.1) AT5G48640 55 / 2e-08 Cyclin family protein (.1) AT4G19560 54 / 7e-08 CYCT1;2 Cyclin family protein (.1) AT1G27630 48 / 6e-06 CYCT1;3 cyclin T 1;3 (.1) AT5G48630 47 / 6e-06 Cyclin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041418 [exp] 578 / 0 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10040640 [exp] 94 / 1e-20 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10036192 [exp] 76 / 9e-15 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10038329 [exp] 69 / 1e-12 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10003151 [exp] 59 / 9e-10 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 59 / 1e-09 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043600 [exp] 476 / 2e-167 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.001G081600 [exp] 98 / 4e-22 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.003G148800 [exp] 97 / 1e-21 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 96 / 3e-21 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 94 / 1e-20 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 87 / 1e-18 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.008G150500 [exp] 60 / 7e-10 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.014G194900 [exp] 54 / 4e-08 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2) Potri.002G246800 [exp] 53 / 9e-08 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2) Potri.010G090400 [exp] 53 / 1e-07 AT4G19600 171 / 1e-48 Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036509 pacid=23174678 polypeptide=Lus10036509 locus=Lus10036509.g ID=Lus10036509.BGIv1.0 annot-version=v1.0 ATGGCAACTGGTCAGGTCCTGTTTCATCGCTTCTTTTGCAAGAAATCATTTGCTAAGTTCAATGTCAAGAAAGTTGCAGCAGGTTGTGTTTGGCTTGCAT CTAAACTAGAGGAGAGTCCTAGAAGAGCAAGGCATGTTATCATTGTTTTTCACAGGATGGAATGCCGCAGGGAGAATTTGCCCATTGAATTTTTGGACAT GAGTTCTAAGAAATTTGCCGAACTAAAGGTGGAGTTAAGTAGAACTGAAAGACACATATTGAAGGAAATGGGTTTCGTTTGTCATGTTGAACATCCACAC AAATTTATCTCTAACTATCTGGCCACCCTTGGAGCAGCATCCCCGGAACTGAGCCAAGAAGCGTGGAATCTGGCTAATGATAGTGAAGTTGTAGCTTGTG GTGTAGTTTATGCTGCTGCTCGGAGATTCCAAGTGCCACTACCCGAGAATCCCCCTTGGTGGAAAGCTTTTGATGCTGATAAATTGAGCATCGATGAAGT TTGCAGAGTGCTAGCTCACCTTTACAGCCTTCCCAAAGCTCAATACATGTCAGTTTGTAAGGATGGCGATTTTTCTTTTACTAACAGGCCCTTGGATTTA CCGTCACAACCAGCTTTAAAGGATGCTCCGCAAACTAGCTCACCAGCAAATAATGATGCTTCAAAGACTGCTCCTACTTTGCTCAATGTAGAATCTGGGG GATCCAAGGGAACATTGATAAAAGCAGCATCGGACAAGCTCAAAGACTCTAAGGGTGATGACGAGTCAAAGCGTGAGGAACCCATTCCAAGATCCAAGTC TGACCACAAAATAGATGCAAACAATGAGAGAAGTAAGGAGAAGGACAGAGACAGGGAGCGAGAAAGAGAAAGGGATAGGGCAAGAGAATCTGGTAGAATG AAGGTTGACCGTGACAGGGGAAGAGAATCTGACAGGGAAAGGGATCGAGATGAGAGTGAAAGGGACAGAAATAAGAACAGAGATAGAGGTCATCGTTCGA AAGATAGAGGAAAAGATTCAGGGCATTCAGAGAAACCAAGGCATCATTCATCACGTGGTATGCGACTTTGGCAGAGTTCATTTAATCGGGAGTACCACAG TTCCACGTATTCGTCAAGGGACAAGGACCGGCACAGGCACCACTCGTACTCGTGA
AA sequence Show only first row Show all	>Lus10036509 pacid=23174678 polypeptide=Lus10036509 locus=Lus10036509.g ID=Lus10036509.BGIv1.0 annot-version=v1.0 MATGQVLFHRFFCKKSFAKFNVKKVAAGCVWLASKLEESPRRARHVIIVFHRMECRRENLPIEFLDMSSKKFAELKVELSRTERHILKEMGFVCHVEHPH KFISNYLATLGAASPELSQEAWNLANDSEVVACGVVYAAARRFQVPLPENPPWWKAFDADKLSIDEVCRVLAHLYSLPKAQYMSVCKDGDFSFTNRPLDL PSQPALKDAPQTSSPANNDASKTAPTLLNVESGGSKGTLIKAASDKLKDSKGDDESKREEPIPRSKSDHKIDANNERSKEKDRDRERERERDRARESGRM KVDRDRGRESDRERDRDESERDRNKNRDRGHRSKDRGKDSGHSEKPRHHSSRGMRLWQSSFNREYHSSTYSSRDKDRHRHHSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10036509 [exp]	0	1
AT5G07950			unknown protein		Lus10021622 [exp]	3.2	0.9193
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	5.7	0.9296
AT5G11500			unknown protein		Lus10037899 [exp]	7.0	0.9261
AT3G51100			unknown protein		Lus10028362 [exp]	7.1	0.9080
AT3G07440			unknown protein		Lus10020404 [exp]	8.5	0.9293
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	8.5	0.9270
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10038952 [exp]	9.6	0.9345
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	9.9	0.9205
AT3G07580			unknown protein		Lus10016076 [exp]	14.8	0.9305
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	16.3	0.9275

Compare expression of checked genes

Lus10036509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.