Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57250 720 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G55510 528 / 5e-170 RBL REBELOTE, Noc2p family (.1) AT2G18220 353 / 3e-104 Noc2p family (.1) AT4G31850 237 / 2e-63 PGR3 proton gradient regulation 3 (.1) AT5G14770 213 / 3e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 206 / 5e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 202 / 2e-53 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 202 / 2e-53 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G19290 200 / 3e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 191 / 8e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041417 [exp] 1083 / 0 AT3G55510 487 / 2e-163 REBELOTE, Noc2p family (.1) Lus10020167 [exp] 976 / 0 AT3G55510 459 / 3e-154 REBELOTE, Noc2p family (.1) Lus10026968 [exp] 594 / 0 AT3G55510 336 / 1e-110 REBELOTE, Noc2p family (.1) Lus10025551 [exp] 304 / 6e-87 AT2G18220 831 / 0.0 Noc2p family (.1) Lus10027010 [exp] 273 / 8e-78 AT2G18220 760 / 0.0 Noc2p family (.1) Lus10003424 [exp] 229 / 6e-61 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10013283 [exp] 211 / 3e-57 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10021989 [exp] 206 / 3e-53 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 203 / 1e-52 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143800 [exp] 1217 / 0 AT5G57250 825 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G043400 [exp] 754 / 0 AT3G55510 591 / 0.0 REBELOTE, Noc2p family (.1) Potri.001G012800 [exp] 330 / 2e-96 AT2G18220 766 / 0.0 Noc2p family (.1) Potri.015G105400 [exp] 271 / 9e-75 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 247 / 4e-67 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 234 / 5e-63 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 236 / 7e-63 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G137200 [exp] 217 / 5e-58 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G213601 [exp] 196 / 5e-55 AT2G18220 416 / 4e-140 Noc2p family (.1) Potri.015G036400 [exp] 207 / 1e-54 AT1G31840 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03715 [flax] [poplar] Noc2 Noc2p family CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036510 pacid=23174565 polypeptide=Lus10036510 locus=Lus10036510.g ID=Lus10036510.BGIv1.0 annot-version=v1.0 ATGGGAAAGCTAGGAAAGAATGCGAGGAAGTTCGCCAAGAAGAATCTTCAGTCAGTAATGAAAAGGCAGAGGAAGATAAAATGTCTGTGGATTGCTTTTC TAAAACTCTGTGTGGCTCTCAGAGACACTCAAGTAGAGGATGTTGGAGCTATATCATTTGATGCGATATTCAATGAGAATGACAGTGATATGGGGGGAGA TGATTCTGGAAGTGATGGATATTTATCAGAGGATGAAGGCTGTATTGGCATAGATGAAGGCAAAAGGGATATTAACCTAAAAGGTGAAGATGTTATGGGG GATTTTTCTGCTGCAGACAGTAGCAAGGATACTGGTGTATCTGACCAGAACCGGATTGTTTTCATGGAGCTTGCAAAGCAAAAGAAAAAATTGGAAAGAT TGAAAGAAAAGCAGTATTCGGGTGAAGATGAAAGTGACGATGATAATAGGCAGTCAACAGATGAAGATGGCGCACTGTTAGGAGTTGGCAAGTGCTTGAG TAGTTCTGCTGTTTGTTCATTGTGTCAACTTGTTAAGGAGCAACATGATAGGCCTTCCCTTATACGGATTTTGAATGCATATAGAGCGGGAAGCCACTAT GGGTCTAAATCTTTTGGTGTTCCGAGAGGCACAGAAGGTCTTGGCAATATTATGATATTTGTGCTTCAGGAAGCAGATGAGGTGTTCCGGAAAATTTTGG GTATTTCTAGTTCCACACAAAAGAAGGAGGTCATTTTGGAATTGAAAAATACATCAAAATGGAAAACCCTGAGGCCTCTCATTAAGTTGTACTTGAGAAG TACAATCTTTCTTCTCAATGAAGTTACTGGCTCTGAAATATTAGCTTTTCTTATGAAGCGACTGAGGACGTCTGTAGTCTTCCTTGCTGCCTTTCCATCA TTACTGCAGAGGCTGATCAAGATCTCTGTTCATCTTTGGGCAACAGGTAAAGGGGATCTGTCCGTGCAGTCATTCCTTGCCATACAAGATGTGGCTGTTG TGTTCAACTCGGATTTGTTTGACACATGCTTCGTCAAGGCATACAAGACCATTATTGGCCACTGCAAATTCGTAGATCCTGCCATTTTTGAACACCTTCA GTTTCTTAAGAAGTCCTTCATTGAGCTGTGTTCTCAAGATATGCAGAAATCAATGCGAATGGCAATTATTTCAATCAGAGAACTTGCTAAGAGTATACAG CTGGGTTTACGAACTAAGCAGAAGGATGCAGTAAAGAAGATTTGCAGCTGGCAGTATGTTAATTGCATTGATCTATGGGTTGATTTTATATCAGTCAACA TACACGACTATAAACTCCAGCCACTGCTTTATACGATGATTCAGATAATAAATGGAGTTGCAGTCCTCTTTCCAGGGCCAAGATACTTACCTTTGAGAGT TAAAAGTGTTCAGTGGTTGAATCTTCTCTCCAGTTCCTGCAGTACATTTATCCCTGTTGCATCGCTGGCACTTGATATTTTGGAATACAAAATGGACAAA GAGAATCAGAAATCTCGCAACGATTTCGACTTGTCATCTGAAGTTAAGTTACCAAAACACTGGATGAAATCTCGGAACTTCCAGGAAGCGTGTCTGTTGT CTACTCTTGAATTGCTTGCTGTGCACTTTGCTCAGTGGGGCTGCCACATATCTTTCCCTGAGTTGGCTACTATCCCGCTGATCCATTTGAGGAAATTCCA TGAAAGGACGAGCATTGAGAGTTTTCGCCGAATGGTGAAACGTTTTATAGATCAGGTGGAGCAGAATGTTGAGTTTGTGCGCAAGAAGAGAGACGAAGTT GCTTTCTCGCCAAAAGATGAGGAGGCAGCTGCGTCATTTCTTCAGCTGGAAAAATCAGGTGGCAACCTTCCATTTATTCAGTACTACAAGAGTCTCACAG GAAGGGTTGCGTCAACGGATCTGCTTATGACTAAAAAGTTGAGTGGATACAAGTGGTTAAGTAAGGAGCTCCGCGGCAAGAGAATGCAGGAAGCCATGAG AGTTTCATGGCGGCTTCCTCCCAAGCTCTCCCGTTCTCTATGTTGCTCCTCTTATCCATGTCCGTCTTGGTCACTCCAAGTTCTACTTAAACGAGGGTTC GCCCCAACTCTCCATCCAATCAACCAATTCCTTCTCTTTCTCTCTACAACACATAGATTTAGCCTAATCACCCACGTCTTCTCTCAAATGAGTCGGAACC AAATCCAGGGCGATTCCCAGACTCATTCGATTGTCGCTTGGTCTCTCCTCAAACTCAACAGGTTCGAAGAGGCAGAACGATTCGTCAAGACCCATGTTTC AAAGTCTTCAGCTCTCCCCAATGGTCGCCTTTGGGATTGTCTAATTCGGGTTGTTTGTATCAATGGGAAGGACCCAGAGAAGGCCTTCTCGCTGCTGCGT GAATCCTTGACTGATTATGGTGTGCTCCCTTCGTCTTTTACTTTCTCTTCGTTGATTCATTGTTTTAGTTCTCAGGGTAACATGAGTAGAGCGATAGAGG TATTGGAGTTTATGAATGGTGATAGTGTTAAGTACTCTTATAACAATTTCGTTTGCAGTTGTGTAATTTCTGGGTTTTGCAAGATTGGGAAGCCAGAACT TGCCCTTCGGTTTTTCAAGGATGCTCTGTGCGTTGGAGCTTTAAAACCCAACGTGGTGACTTACACTGCACTTGTTACTGCCCTTTCTAACTTGGGCAGA GTTGATGAGATATCTGATTTGGCCTCTAGGATAGTTAAGGAAGGATTGGCGTTGGATATAGTTTTCTACAGTAGCTGGATTTCTGGCTACTTTTCCCAAG GTATGTTAATGGAGGCATTTCGAAAACATTGGGAAATGGTTAAATCGGGGTTTGGATCCGATGCAATCAGTGATACCATATTGATAGATGGGCTATCCAA ACATGGCAGCGTTGAAAAGGCAGTGGGATTTCTCCTTAAGATGGTAGAGACTGGGCTGCAACCTAACCTAGTTACATATAGTACACTAATGTTAGGATTC TGCAAGAAGGGGAAAGTTGTTGAAGCATGTTCATTATACGAGACTATTAAGAGTTCAGGAATCAAACTGGATGACTATGTGTATGCAATATTGGTTGATG GATTATGTAGGCAAGGGAATTTTAAGCGTGTTGCTGAACTTCTTGATGAAATGGAAACTGAAGGCATTCGTCCAAGTTTAATAACTTACAATACTTTAGT CAACGGATTATGCAACGCTAGGAAAACATCCGACGCTGATGAACTATCAAAAAGGATAAATGTTGATATTGTTACATACAGCACATTACTACATGGGTAC ATTGAAGAAGCTAATGTCGTGCGGATTTTAGAGATTATAAAGAGATCAAAAGATGATGGAATCGGTATGGATGTGATTATGTGTAACATACTTATCAGGG CAAATTTTATGGTTGGTGCATTTGAAGAAGCCTATATTCTGTATAAAGGAATGCAAGTGATGGATTTGGTTGCAGATTCTATCACTTACTGTACAATGAT TGATGGGTATTGTAAAGTAGACAGAATTGAGGAAGCACTGCGGATATTTGATGAATTTCGGAGAAAGTCAATTTCTTCAGCAGCATGTTACAATTGTCTG ATTAGTTGGCTATGTAAGAAGAATATGGTGGATATGGCTACAAAAGTATTTTTTGAACTCATTGAGAATGGTTTGACATTGGATGTCAGTATTTATATGA TGCTACTAAAAGCAACTCTGAAAGAAAGTCCAGATAGAGTTCTGAATTTGATTGACCGTATTGAGAGCCTAGGATTAGACATATTTGGAGGTTTATGTGA CCGAACTATCAGTTTATTGTGCAAAAGAAATTTTGTCGTACCTGCAACAAAAGTTTACACAGCAGCAAGGAGGAATTGTTCCATTTTGGCTAGCAGATCT TACTATTGCCTACTGAGACAACTAATTAGGCAAAGACATTCTCAGCTAAGCCGGCCCATTCTAAGTTCTTTCGTCAAGCAGTATGGCTTCGTTGAGCTTC GAGTAAATAGGATTCTGCTGCATTTTCTGTGTCTAAAGGACATTCCGTGTGCACTTAAACTTCATAGCATAATGAAGGAGAATAATCAATTTGTCAGTAT TCCTGTCAGTGTTCTAAAGGCAATGACAAAAAACAATGGAGTTTTGACTGCATATGAACTTATCATGGGGGCTAAGGATGATATACCAGGTATGGATATG GTTGGCTATTCTATAGTCATTGACGGCCTTATTAAAGGAGGCCATACTATTAAGGCTCTGGATATCTGTGAATTAGCTGAAACAAAGCAGATTTCTCTTA ACATATTTACATACAACTCTCTTATGAATGGATTGTGCAAACAAGGTTGTTTTGTTGAAGCATTTCGCTTATTTGATTCATTAGAAAGAATGAACTTGCG TCCTTCTGAAGTCACATACGCGACACTCATTGACAGCCTGTGTAGAGAAGGATATTTGATGGATGCTCAACAGTTGGTTGACAGAATGGTTCTCGGTGGC TACAAAAGAAGTGCTCATGTCTATAATTCACTTCTTAATGGATATTGCAAGACTGGTCAAGTTGAGGAAGCCTTAATGATTCTGAATAACATGGATGCGG AACATCTTACACCTGACGAATTTACTGTTAGTGCTGTGATTAATGGTTATTGTCAAAGGGGTGACATGGAGAAGGCTCTCAGATTCTTTTCTGAGTGTCA GTTGAAAGGTACATCGCCTGATTTCCTGGGCTTTCTGTTTTTGATAAGGGGTTTATGTACCAAGGGTAGAATGGAAGAGGCAAGAAGCATCTTGAGAGAA ATGCTGAAGTCACAACATGTTCTAGAGGTATTGAATAGTGTTGATTATTTGGCTCAAACAGATTCAATAGGTGGTTTTCTTGTATCCTTGTGTGATCAGG GTAGCATCAAAGAAGCAGTTATGGTACTCGATGAAGTTAGTGCTATGTTTTATCCACATAGTAAAAGGTATAGGCTTCATCATGAACAAGAGGATCTGGG GCAACTTACAGAATCCATGCCATTCAGTCCAGTTGCTCATGAGGGGAGAGTTGATCTGAAGGTTCCATATTATGATATGATTGGAGTGGACAGCACTTTG GAGTATAGTTATGATCCGAAAGGAGGATCTGAATCTAATTCCTTCGATTCATATTCTTCTTTAATTGTATCACTCTGTTCAAAAGGTGATCTTGGTGAAG CTAATAGATTAGCAGAGGAGATGCTGACTAATTTTGTTGGAAAATGA
AA sequence Show only first row Show all	>Lus10036510 pacid=23174565 polypeptide=Lus10036510 locus=Lus10036510.g ID=Lus10036510.BGIv1.0 annot-version=v1.0 MGKLGKNARKFAKKNLQSVMKRQRKIKCLWIAFLKLCVALRDTQVEDVGAISFDAIFNENDSDMGGDDSGSDGYLSEDEGCIGIDEGKRDINLKGEDVMG DFSAADSSKDTGVSDQNRIVFMELAKQKKKLERLKEKQYSGEDESDDDNRQSTDEDGALLGVGKCLSSSAVCSLCQLVKEQHDRPSLIRILNAYRAGSHY GSKSFGVPRGTEGLGNIMIFVLQEADEVFRKILGISSSTQKKEVILELKNTSKWKTLRPLIKLYLRSTIFLLNEVTGSEILAFLMKRLRTSVVFLAAFPS LLQRLIKISVHLWATGKGDLSVQSFLAIQDVAVVFNSDLFDTCFVKAYKTIIGHCKFVDPAIFEHLQFLKKSFIELCSQDMQKSMRMAIISIRELAKSIQ LGLRTKQKDAVKKICSWQYVNCIDLWVDFISVNIHDYKLQPLLYTMIQIINGVAVLFPGPRYLPLRVKSVQWLNLLSSSCSTFIPVASLALDILEYKMDK ENQKSRNDFDLSSEVKLPKHWMKSRNFQEACLLSTLELLAVHFAQWGCHISFPELATIPLIHLRKFHERTSIESFRRMVKRFIDQVEQNVEFVRKKRDEV AFSPKDEEAAASFLQLEKSGGNLPFIQYYKSLTGRVASTDLLMTKKLSGYKWLSKELRGKRMQEAMRVSWRLPPKLSRSLCCSSYPCPSWSLQVLLKRGF APTLHPINQFLLFLSTTHRFSLITHVFSQMSRNQIQGDSQTHSIVAWSLLKLNRFEEAERFVKTHVSKSSALPNGRLWDCLIRVVCINGKDPEKAFSLLR ESLTDYGVLPSSFTFSSLIHCFSSQGNMSRAIEVLEFMNGDSVKYSYNNFVCSCVISGFCKIGKPELALRFFKDALCVGALKPNVVTYTALVTALSNLGR VDEISDLASRIVKEGLALDIVFYSSWISGYFSQGMLMEAFRKHWEMVKSGFGSDAISDTILIDGLSKHGSVEKAVGFLLKMVETGLQPNLVTYSTLMLGF CKKGKVVEACSLYETIKSSGIKLDDYVYAILVDGLCRQGNFKRVAELLDEMETEGIRPSLITYNTLVNGLCNARKTSDADELSKRINVDIVTYSTLLHGY IEEANVVRILEIIKRSKDDGIGMDVIMCNILIRANFMVGAFEEAYILYKGMQVMDLVADSITYCTMIDGYCKVDRIEEALRIFDEFRRKSISSAACYNCL ISWLCKKNMVDMATKVFFELIENGLTLDVSIYMMLLKATLKESPDRVLNLIDRIESLGLDIFGGLCDRTISLLCKRNFVVPATKVYTAARRNCSILASRS YYCLLRQLIRQRHSQLSRPILSSFVKQYGFVELRVNRILLHFLCLKDIPCALKLHSIMKENNQFVSIPVSVLKAMTKNNGVLTAYELIMGAKDDIPGMDM VGYSIVIDGLIKGGHTIKALDICELAETKQISLNIFTYNSLMNGLCKQGCFVEAFRLFDSLERMNLRPSEVTYATLIDSLCREGYLMDAQQLVDRMVLGG YKRSAHVYNSLLNGYCKTGQVEEALMILNNMDAEHLTPDEFTVSAVINGYCQRGDMEKALRFFSECQLKGTSPDFLGFLFLIRGLCTKGRMEEARSILRE MLKSQHVLEVLNSVDYLAQTDSIGGFLVSLCDQGSIKEAVMVLDEVSAMFYPHSKRYRLHHEQEDLGQLTESMPFSPVAHEGRVDLKVPYYDMIGVDSTL EYSYDPKGGSESNSFDSYSSLIVSLCSKGDLGEANRLAEEMLTNFVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57250			Pentatricopeptide repeat (PPR)...		Lus10036510 [exp]	0	1
AT1G30240			unknown protein		Lus10026071 [exp]	1.4	0.9387
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	2.4	0.8998
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10040434 [exp]	4.2	0.9161
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10028117 [exp]	4.9	0.8737
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	5.1	0.8862
AT5G15550			Transducin/WD40 repeat-like su...		Lus10041271 [exp]	7.2	0.8524
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	8.4	0.9029
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002021 [exp]	8.8	0.9097
AT4G11120			translation elongation factor ...		Lus10012296 [exp]	9.6	0.8699
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	9.9	0.8683

Compare expression of checked genes

Lus10036510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.