Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30230 53 / 5e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041416 [exp] 418 / 8e-150 AT4G30230 61 / 5e-11 unknown protein Lus10023495 [exp] 129 / 8e-37 ND 48 / 1e-06 Lus10040376 [exp] 119 / 2e-31 AT5G03030 184 / 6e-58 Chaperone DnaJ-domain superfamily protein (.1) Lus10036512 [exp] 46 / 1e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043300 [exp] 90 / 2e-21 AT4G30230 50 / 4e-07 unknown protein Potri.010G218300 [exp] 78 / 6e-17 AT4G30230 48 / 2e-06 unknown protein Potri.018G092800 [exp] 72 / 1e-14 AT4G30230 98 / 4e-24 unknown protein Potri.006G168400 [exp] 64 / 1e-11 AT4G30230 94 / 8e-23 unknown protein Potri.010G219300 [exp] 45 / 2e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036511 pacid=23174625 polypeptide=Lus10036511 locus=Lus10036511.g ID=Lus10036511.BGIv1.0 annot-version=v1.0 ATGGAGACTGTGAACCTCCTTGATCCTCAACAACATCAACCCTCTTATGATGATGACGATGATGCTGACAAGGACGACATCCTTTCACTCCGTGATCTCC CACTAACAACTAGCAGCAGAAATTGGACTAATCCTGATAGGGATCCAGGGGCTGATCATCATCAGGAAGATGGGTTCGAGTTCGATCCCTACTCCTTTTC TCATGCTGAAGATGAGGAGGAGGGTGACATCATTTTCTGTGGGAAGATCATTCCATACAGAGCTTCTAAATCGGAGGGAGCAACAGAGAGTAGTATCTTC CACCGAAGATCATATTCTCTCAACAAGCCAAGAGGGGCAACTGCTGTCTCATCACTCTACGGCAGAGATTATTCTTCTACTCATCATCATCAAGTAAAGA GGTTCTGGTCTTTACCAGTATCGGCAGCAGCAAGTAATGGACTTCGAGACTCTTTGAGGAGCAGCCATGGTGGCAGTGATTCGAGGGTAGTGCCTAGGTC GAAATCAAGATGGTATGTGCTGGCGTTTGGAGTGGAGAAAATTCCAGTTAAGATGGAGCTTCACGATATGAAGTTGAGACAGAGCAAGAACTTCAACAGT CATATGTTTCAACCGAATCAACAAGTGGTCAAGCAGAGTAGCAACAGTTGCAGGAAGGGTTCCTTGTGGGGATTGCTTGGGATCTTGGGCTGCAACAGAG AAGAAGCAAGTAATATGGTTAAAGCCTCATTTGTTTGCATTCCAAATGTCTGA
AA sequence Show only first row Show all	>Lus10036511 pacid=23174625 polypeptide=Lus10036511 locus=Lus10036511.g ID=Lus10036511.BGIv1.0 annot-version=v1.0 METVNLLDPQQHQPSYDDDDDADKDDILSLRDLPLTTSSRNWTNPDRDPGADHHQEDGFEFDPYSFSHAEDEEEGDIIFCGKIIPYRASKSEGATESSIF HRRSYSLNKPRGATAVSSLYGRDYSSTHHHQVKRFWSLPVSAAASNGLRDSLRSSHGGSDSRVVPRSKSRWYVLAFGVEKIPVKMELHDMKLRQSKNFNS HMFQPNQQVVKQSSNSCRKGSLWGLLGILGCNREEASNMVKASFVCIPNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30230			unknown protein		Lus10036511 [exp]	0	1
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	1.0	0.9330
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10025988 [exp]	7.3	0.8967
AT5G03030			Chaperone DnaJ-domain superfam...		Lus10040376 [exp]	11.5	0.9015
AT2G34930			disease resistance family prot...		Lus10024736 [exp]	15.0	0.8969
AT3G10915			Reticulon family protein (.1.2...		Lus10029041 [exp]	15.7	0.9135
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	18.1	0.9011
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	21.3	0.9036
AT2G20410			RNA-binding ASCH domain protei...		Lus10006580 [exp]	21.7	0.8742
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	25.0	0.9043
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	29.7	0.9042

Compare expression of checked genes

Lus10036511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.