Plant FIBer expression Database

Lus10036512 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023496
[exp]
69 / 2e-13 ND /
Lus10040377
[exp]
68 / 4e-13 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10036512 pacid=23174643 polypeptide=Lus10036512 locus=Lus10036512.g ID=Lus10036512.BGIv1.0 annot-version=v1.0
ATGGATGTTACTACTTCTCCACTGCTAGCCAGATCAGGGAAACAAACCAGTGATCAATTAGCTCCCAATCTCGTTGATGATGATCATTATTATTATAATG
ATGATGATGATGATGAAGAGGATACTCTTTCGCTCCGTGATCTTCCACTCCACAGCAACGACGACAACGACGACCGGTCTATTATTAATTCTCCGGCACA
TCAACAAGTAGAGGATTTGTTCGAGTTCTCGAGCGAGTTCTTGATCAAATCTAATGTTGGCGGCCAGGCTGTTGACAGAAATAGCAGTACTAGCAATGTG
GTCTTCTGCGGGAAGCTCATTTCTCACGGGCAAGTGGAAAATAAAGAGGCGGAGGTGGTGGATCAGAAGCAGAAGAATGAAGATCATGACAACACTACTA
CTAGTACTGCCTCGGTTAATTCTAAGAAGAAGCAGAGTCGAGTTTCCCGGTGGAAGTCATTCTCGATGGCCTCCTCCTCCTCAGCATCAGCATCATCATC
ATCGTCATCGTGCTGTTCGTCTAGGAACGGGTCAATTAAGTCGGAGGATGGGAGTTTCGATTCGGAAGTAGTGGTGTTGAAAAAGAAGAAGGAGATTAAG
AAGAATGGGAGATCGAAAGGATACAAGTGCATGGCGATTGGGGTGGAGTGGAAGTTTCCGGTGAAGAGTATGGATATTCAGGATATTAAGGTTAGGCAGA
GCAGGATCTACAGCAATCGAAGCAGCTTTGATTATACTACTACAAATAATGATGGTTTTCGGTCGTCGGATTCGTCGGCGGCTACTAAATCCTCTGCAAA
GGGCTTATGGTCTTTGCTCGGAGTTCTGGCCGGCGGCGGCCGCCCCTACTAG
AA sequence
>Lus10036512 pacid=23174643 polypeptide=Lus10036512 locus=Lus10036512.g ID=Lus10036512.BGIv1.0 annot-version=v1.0
MDVTTSPLLARSGKQTSDQLAPNLVDDDHYYYNDDDDDEEDTLSLRDLPLHSNDDNDDRSIINSPAHQQVEDLFEFSSEFLIKSNVGGQAVDRNSSTSNV
VFCGKLISHGQVENKEAEVVDQKQKNEDHDNTTTSTASVNSKKKQSRVSRWKSFSMASSSSASASSSSSSCCSSRNGSIKSEDGSFDSEVVVLKKKKEIK
KNGRSKGYKCMAIGVEWKFPVKSMDIQDIKVRQSRIYSNRSSFDYTTTNNDGFRSSDSSAATKSSAKGLWSLLGVLAGGGRPY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10036512
[exp]
0 1
AT2G04520 Nucleic acid-binding, OB-fold-... Lus10029827
[exp]
6.4 0.9260
AT5G04220 SYT3, NTMCTYPE1... synaptotagmin 3, Calcium-depen... Lus10037993
[exp]
27.9 0.8615
AT2G41480 Peroxidase superfamily protein... Lus10007051
[exp]
34.1 0.9069
AT1G10370 GST30B, ATGSTU1... GLUTATHIONE S-TRANSFERASE U17,... Lus10013282
[exp]
41.4 0.8654
AT5G05340 Peroxidase superfamily protein... Lus10009937
[exp]
48.5 0.8978
AT5G64120 Peroxidase superfamily protein... Lus10007050
[exp]
89.4 0.8688
AT5G11650 alpha/beta-Hydrolases superfam... Lus10000572
[exp]
95.6 0.8558
AT4G14710 ATARD2 RmlC-like cupins superfamily p... Lus10006617
[exp]
129.8 0.8822
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Lus10026178
[exp]
151.8 0.8766
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10004704
[exp]
222.9 0.8594

Lus10036512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.