Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25030 350 / 2e-120 unknown protein AT5G45410 291 / 6e-97 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041415 [exp] 531 / 0 AT4G25030 408 / 5e-143 unknown protein Lus10041414 [exp] 513 / 0 AT4G25030 424 / 4e-149 unknown protein Lus10036514 [exp] 511 / 0 AT4G25030 420 / 1e-147 unknown protein Lus10033276 [exp] 307 / 7e-103 AT4G25030 348 / 4e-119 unknown protein Lus10034730 [exp] 296 / 4e-99 AT4G25030 336 / 6e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219900 [exp] 410 / 1e-143 AT4G25030 355 / 5e-122 unknown protein Potri.008G042100 [exp] 409 / 8e-143 AT4G25030 355 / 1e-121 unknown protein Potri.001G131300 [exp] 316 / 1e-106 AT5G45410 337 / 9e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036513 pacid=23174358 polypeptide=Lus10036513 locus=Lus10036513.g ID=Lus10036513.BGIv1.0 annot-version=v1.0 ATGGAGTTCAGAGGGCTAAATGAGGATTCTGCATCGTCCGAGCTTGACATCCTTAGGTGTCCATTTTTGAGAAATATCAATGAGCCGACAAGCTTTTCCT TCTCTTCAGCCATGCCTTTTCCTATGCCTGGGCACATAGGCAAAGGTCCCATTTTTGAAGATGGCCCTAATTTTGATTCGACATTCAGGCTATTCCATGG CCAAGATGGAGTAGTCCCACTCTCGGAAAGGTCATTCCCACTTTCTGAGAGAATTGAGCCTCGTCATGCCTTGCCTGCGTTTAACCCATTAGCTGCAAAG GCAGCCACAATCAGTCTCTCATCTTTTGGTGGGCCCTTTAGCTTTGATGCATTTTCTAAAAAGTGGAACAATCAGAACAAGAATTCCAAATCATCGAAGA AAGGCTCGTCTTCACAGGGAGGAAAGTCTGAACATGAGTCGATGAGCGATGAATGGCTGCGACATGGGAACTGCCCAATTGCAAAGTCATATCGGGCAGT CAGCAGTGTCCTGCCTCTTGTTGCAAAAGCTTTGCAGCCTCCTCCTGGGATGAAACTCAAGTGCCCACCTGCAATAGTTGCAGCCAGAGCAGCTATATCA CGGACTGCGTTTGCAAAGAATCTAAGGCCACAACCCTTACCTGAGAAAGTAATGGTGATTGGGATGCTAGGAATGGCTGCAAATGTTCCTCTAGGAGTAT GGAGAGAACACACTGAAAAGTTCTCGCTCTCGTGGTTTACAGCTGTACATGCTGCAGTTCCGTTCATAGGAATGCTAAGGAAATCCATACTGATGCCCAA GTCAGCTATGGCCTTCACCATTGCAGCATCTATACTAGGTCAGGTTATTGGTTCCAGGGCGGAACGATACCGCCTCAAGGCCAAGGCAAAAGAAACAGTG AAGGAAATGTCTCCCATTGAAGCTAGTGTACATCCGTCATCACCATCCTTAGAATCCATTGCAGTGAAAACTGGGCTTGGTGGGCATCTAATTGAGTACC CAGTTTCCCTTCATTCTCCCACAACTGCAACAAATGTAATCTGCTAA
AA sequence Show only first row Show all	>Lus10036513 pacid=23174358 polypeptide=Lus10036513 locus=Lus10036513.g ID=Lus10036513.BGIv1.0 annot-version=v1.0 MEFRGLNEDSASSELDILRCPFLRNINEPTSFSFSSAMPFPMPGHIGKGPIFEDGPNFDSTFRLFHGQDGVVPLSERSFPLSERIEPRHALPAFNPLAAK AATISLSSFGGPFSFDAFSKKWNNQNKNSKSSKKGSSSQGGKSEHESMSDEWLRHGNCPIAKSYRAVSSVLPLVAKALQPPPGMKLKCPPAIVAARAAIS RTAFAKNLRPQPLPEKVMVIGMLGMAANVPLGVWREHTEKFSLSWFTAVHAAVPFIGMLRKSILMPKSAMAFTIAASILGQVIGSRAERYRLKAKAKETV KEMSPIEASVHPSSPSLESIAVKTGLGGHLIEYPVSLHSPTTATNVIC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25030			unknown protein		Lus10036513 [exp]	0	1
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	5.6	0.9494
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	6.0	0.9312
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	6.9	0.9282
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	6.9	0.9256
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	9.1	0.8933
AT1G25370			Protein of unknown function (D...		Lus10038942 [exp]	9.7	0.9259
AT3G09032			unknown protein		Lus10035520 [exp]	11.2	0.8979
AT5G10190			Major facilitator superfamily ...		Lus10038972 [exp]	13.0	0.9096
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	20.2	0.8933
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	22.9	0.9283

Compare expression of checked genes

Lus10036513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.