Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25030 365 / 8e-126 unknown protein AT5G45410 312 / 4e-105 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041414 [exp] 550 / 0 AT4G25030 424 / 4e-149 unknown protein Lus10041415 [exp] 539 / 0 AT4G25030 408 / 5e-143 unknown protein Lus10036513 [exp] 524 / 0 AT4G25030 413 / 8e-145 unknown protein Lus10033276 [exp] 303 / 2e-101 AT4G25030 348 / 4e-119 unknown protein Lus10034730 [exp] 293 / 6e-98 AT4G25030 336 / 6e-115 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219900 [exp] 421 / 7e-148 AT4G25030 355 / 5e-122 unknown protein Potri.008G042100 [exp] 419 / 7e-147 AT4G25030 355 / 1e-121 unknown protein Potri.001G131300 [exp] 328 / 3e-111 AT5G45410 337 / 9e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036514 pacid=23174426 polypeptide=Lus10036514 locus=Lus10036514.g ID=Lus10036514.BGIv1.0 annot-version=v1.0 ATGGGCTTGAGAGGGCTAAACGAGGATCCTGCATCTTCTGAACTAGGCATCCTCAGGTGTCCATTTTTGAGAAATATCAATGAGCCAACAAACTTCTCCT TCTCGTCGGCCATGCCTTTTCCTATACCTGGCCGCATGGGCAAAGGTCCTATTTTTGAAGATGGCCCTAATTTTGATTCAGCATTCAGGCTATTCCATGG GCTAGATGGAGTAATCCCACTTTCGGAAAGGTCATTCCCGCTTTCTGAGAGAATTGAACCTCATCATGCCTTGCCTGCGTTTAACCCATTAGCTGCAAAG GCAGCCACAATCAGTCTCTCGTCTTTTGGCCCTGGTGGACCCTTTAGCTTTGATGCATTTTCTAAGAAGTGGAACAATCAGAACAAGAATTCCAAATCAT CGAAGAAAGGCTCTTCTTCCCAGAGAGGAACATCTGAACATGAGTCAATGAGCGACGAATGGCTGCAACATGGGAACTGCCCAATTGCAAAGTCATATCG GGCAGTCAGCAGTGTCCTGCCTCTTGTTGCGAAAGCTTTGCAGCCTCCTCCTGGGATTAAACTCAAGTGCCCACCTGCAATAGTTGCAGCCAGAGCAGCT ATATCGCGGACTGCGTTTGCAAAGAATCTAAGGCCGCAACCCTTACCTGAAAAAGTAATGGTGATTGGGATGCTAGGAATGGCTGTAAATGTTCCTCTAG GAGTATGGAGGGAACACACTGAAAAGTTCTCACTCTCGTGGTTTACAGCTGTGCACGCTGCAGTTCCGTTCATAGGAATGCTAAGGAAATCCATACTGAT GCCCAAGTCAGCGATGGCCTTCACCATTGCAGCATCTATACTAGGTCAGGTTATTGGTTCCAGGGCAGAACGGTACCGCCTCAAGGCCAAGGCAAAAGAT GCTGTGAAGGAAATGCCGCCTCTTATTGAAGCTAGTGAACCATCCTTAGAATCCATTGCTGTGAAAACTGGGCATGGTGGGCATCTGATAGAGTACCCAG TTGTGCTTCATTCTCCCACGGCTGCAACAAATATAATCTGCTAA
AA sequence Show only first row Show all	>Lus10036514 pacid=23174426 polypeptide=Lus10036514 locus=Lus10036514.g ID=Lus10036514.BGIv1.0 annot-version=v1.0 MGLRGLNEDPASSELGILRCPFLRNINEPTNFSFSSAMPFPIPGRMGKGPIFEDGPNFDSAFRLFHGLDGVIPLSERSFPLSERIEPHHALPAFNPLAAK AATISLSSFGPGGPFSFDAFSKKWNNQNKNSKSSKKGSSSQRGTSEHESMSDEWLQHGNCPIAKSYRAVSSVLPLVAKALQPPPGIKLKCPPAIVAARAA ISRTAFAKNLRPQPLPEKVMVIGMLGMAVNVPLGVWREHTEKFSLSWFTAVHAAVPFIGMLRKSILMPKSAMAFTIAASILGQVIGSRAERYRLKAKAKD AVKEMPPLIEASEPSLESIAVKTGHGGHLIEYPVVLHSPTAATNIIC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25030			unknown protein		Lus10036514 [exp]	0	1
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	4.2	0.9578
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	7.6	0.9521
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	9.5	0.9480
AT4G16100			Protein of unknown function (D...		Lus10037717 [exp]	10.8	0.9184
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	12.2	0.9513
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10013887 [exp]	12.7	0.9402
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	13.1	0.9519
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10035477 [exp]	14.1	0.9310
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10007530 [exp]	14.8	0.9405
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	15.4	0.9488

Compare expression of checked genes

Lus10036514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.