Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35770 99 / 8e-25 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G07990 92 / 2e-22 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G35780 82 / 1e-18 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30810 72 / 3e-15 SCPL29 serine carboxypeptidase-like 29 (.1) AT3G02110 68 / 5e-14 SCPL25 serine carboxypeptidase-like 25 (.1) AT4G30610 68 / 7e-14 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 64 / 2e-12 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 59 / 9e-11 SCPL23 serine carboxypeptidase-like 23 (.1) AT5G23210 56 / 1e-09 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G17180 54 / 5e-09 SCPL33 serine carboxypeptidase-like 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041412 [exp] 179 / 2e-54 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10040387 [exp] 87 / 2e-20 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10023505 [exp] 84 / 2e-19 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10015382 [exp] 69 / 4e-14 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10037810 [exp] 66 / 3e-13 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10015489 [exp] 63 / 6e-12 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 61 / 2e-11 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010190 [exp] 52 / 3e-08 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 51 / 8e-08 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220200 [exp] 125 / 2e-34 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 121 / 6e-33 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.008G041800 [exp] 85 / 8e-20 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 84 / 1e-19 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 81 / 2e-18 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.004G120100 [exp] 69 / 3e-14 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 69 / 4e-14 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.018G105700 [exp] 67 / 2e-13 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.006G183200 [exp] 64 / 3e-12 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G149400 [exp] 56 / 9e-10 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10036516 pacid=23174561 polypeptide=Lus10036516 locus=Lus10036516.g ID=Lus10036516.BGIv1.0 annot-version=v1.0 ATGTTGGGGAATCCAGTGATAGATGAGTACCATGACAACGTGGGAAGCCACGAGTGCTGGTGGAACCATGGACTCATCTCGGACCAAACCTACAAACAAC TCAAAGCGTATTGTCGAAACGACTCGTTTCTGTTCCCAGGGGAGCACTGCAACTCTGCCTTGGACAGCGCTTTCGATGAGCTCGGGGACATCAATCCTTA CAGCATCTACACTCCTCCTTGCCATGATGATCTCGCGTCTCGCCGCAAACACAATCCTCTGGGGGAGCTTGAAGGTTTGGAAAAGAAAGAGAAAGATGAA GGTTTGTTTGGTAGTGGTGGGGCTGGGAACGAAGAAGAAAAAGCAGAAAGAAGGAGGCTTGATGATGGTGGGATTGTGCATATTGGTGGAAAATGTTCCA AGTTAAAGTTGGTATTTCATGTAGTTCAAATTGATGATTGTAAGATAAAGATCGATGAATAG
AA sequence Show only first row Show all	>Lus10036516 pacid=23174561 polypeptide=Lus10036516 locus=Lus10036516.g ID=Lus10036516.BGIv1.0 annot-version=v1.0 MLGNPVIDEYHDNVGSHECWWNHGLISDQTYKQLKAYCRNDSFLFPGEHCNSALDSAFDELGDINPYSIYTPPCHDDLASRRKHNPLGELEGLEKKEKDE GLFGSGGAGNEEEKAERRRLDDGGIVHIGGKCSKLKLVFHVVQIDDCKIKIDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10036516 [exp]	0	1
AT1G65820			microsomal glutathione s-trans...		Lus10020792 [exp]	1.4	0.9812
					Lus10033479 [exp]	2.2	0.9819
AT5G51740			Peptidase family M48 family pr...		Lus10031682 [exp]	3.9	0.9802
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028557 [exp]	4.5	0.9788
AT1G47790			F-box and associated interacti...		Lus10031533 [exp]	4.9	0.9765
					Lus10015244 [exp]	5.0	0.9785
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10031027 [exp]	6.3	0.9522
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10043176 [exp]	7.7	0.9198
					Lus10037567 [exp]	8.4	0.9597
AT5G67620			unknown protein		Lus10019264 [exp]	8.8	0.9146

Compare expression of checked genes

Lus10036516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.