Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22260 595 / 0 AtZYP1a, ZYP1a Myosin heavy chain-related protein (.1) AT1G22275 593 / 0 ZYP1b Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032798 [exp] 1092 / 0 AT1G22260 575 / 0.0 Myosin heavy chain-related protein (.1) Lus10041143 [exp] 1038 / 0 AT1G22260 451 / 8e-148 Myosin heavy chain-related protein (.1) Lus10010242 [exp] 588 / 0 AT1G22275 279 / 5e-83 Myosin heavy chain-related protein (.1) Lus10036473 [exp] 257 / 9e-81 AT1G22275 86 / 6e-20 Myosin heavy chain-related protein (.1) Lus10019419 [exp] 119 / 2e-31 AT1G22260 47 / 4e-07 Myosin heavy chain-related protein (.1) Lus10030096 [exp] 71 / 1e-14 AT1G22275 47 / 4e-07 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096400 [exp] 748 / 0 AT1G22275 786 / 0.0 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036517 pacid=23174588 polypeptide=Lus10036517 locus=Lus10036517.g ID=Lus10036517.BGIv1.0 annot-version=v1.0 ATGAAGAAACTAGCGTTTCCTAGCTTGAGGAGCTTCGATCATTTCAAGGCGGCGGCCGGACCTGCGAGGAGCTTCTCGCATCCTTCACGCTCATCTTCCG ACCACATGTCGCTCGGAAGTTTCACCAACCTCAAGGTCGCTGCAGAGAAACTGGTGAAAGAGCAAGCTTCTCTGAAAACAGATCTGGAAACTGCGAACAA CAAGCTTAAGAAGTCAGCGGAGAATGTCCGTGCTCTAGAGGAAAAGTTGCAGAACGCGTTTCATGAGAACGTGAAGCTGCAAGTTGAGCGTAAAGAGAAC GAGAAGCTCTGGAATGGATTGGAGTCTAGGTTCTGTTTAACCAAATCGATGTGCGATCAACTCTCTGAGACTTTAGATCGTTTAGCTGTACAACTTCAGG ATGCTGAAAAGGACAAGGCATTTTTTGAATGCAAGTTATCCGAAAGCTCAAATGCCATCGACATCTTGAATCAACAAATACACCATCTGTCGCTAAAAAT AACCTCTACTGAGGAAACTGTGACCACTCGCGAGAAGGAGTTGATGGATCTTAGAACTGAAGATAAGGAGAAGTGCGATGTCTTTGCAGAAGAGAAGTAC AGACTGACTAACCTAATTGTGGAAAAAGATTCCACGATCAAGCTGTCTGAAGCAGGACTAGCAGAAAGTCAATCACACACGAGGATTCTACACTCGAAAC TGGAAAATTTGCATCTGGAATTGAAGCTAAAGGACGACAAAATCAAGAATTCCTCAATTGCTGTCCAGAACTTGGAGAAAGAAAAGAGTGACCTCCAACT GACCAAGGAGAGAATTTCTAACGACTTAGATACCTCACGTGATGAGATAAGGAAGTTGGAAAGCTTTATTAATGTCATGACTGCACAGTTAGTTCAACTA GACAAACGAAGTCTGGATTTCACCAAAAACTTTGATCTCCTAAATTCTCTGTATGATACTTCCTCTAAGTTGATCGAGGAAGAGAAAGACCTTGCCTCCA GGCATGCTACCAAGCAGTATGATATGCTCCACAACCAAGTCGTGGTAGTGACATCTGAAAGAGAGGAGATGCAACTGACGATCAAGGAACTGAATGATGA GATATATGAGCTTCAGAAGGCACAAGACTCTATCAGAGAAATGCTCGCTGGGGAACAGAAAACAGCTGCTCAGAAAATTAGCAAGTTGGAAGCTGAGTCA AAAGCGCTAGAGAAAAAGAAGGATGTAACAGAGTTTATACTTTTAAACTTGGAGGAGAAATTCGCTGCTTTGTCAGAAAGCTCAAGATCATCTGAGGAAG AAATGGAACGACTTCTGCAGAAACTAGCAAGGCTGGAAGAGGAGAACAGATATAGCACAGGAAAGTTACAGGCGGATATGCAGGAAAAGGTAGATGAAAT CGACAATCTGCAGAAGGAATTTGCAAAGCATGACCAAGAAATAAATTCATGGGAGAAGAAAGTCGACCAACTTCAAAATAAGGTGCAAGAAAAGGAAGAA CTTATTCTGCAAGGCAAGGAGAGTGAAAGAAAGTTGGAAGATCAAATCAATGAGGTTAAGGCATCATTGACCACAGCTGAAAGCAGACTCGTGGAAGTAC GGGAGCAATGTGAGGTGATGCTTGATTGCAAAGAACAGGAGTTGTCCAAGCATTTGCGAGAAATTTCTACTGGGAATGATCAGGCGATAGCTGCAATTCG GACGAAGTATGAGGATGGGAAGGCAGAAATCATTAACATGGAAAAGGAAAAGGTGAACAAACTACTACATGACATGGAAAGGAAATATGATCAGAAAATT TCGGAGCAAAAGGAAGACTCAAGACAGCAATTACTGCACATTCAAGACGAGCATGCTGCACTGATTACAAAAATCCAGCAGGAAAATGAAACAAAGGAAA CGAGTCTTAAAGCTCATCACAGCGAACAGCTAAAGCATGCAGAACTCCAAGCTGTGGAAGGACAAAGAGAGAAGATACTGCAACTACGAAATGAACACGA GGTTCAAATGAAAGCTCTGAGAACCCAGTATGAAGATGTGTGCAAGAAACTACAGGACGAATTGGATATCCAGAAGTCCAAGGAAGATAGGCAGAGGGCT TTGCTGCAGATGCAGTGGAAAGTGATGAGTGACAAACAAGATAATAATGATGCAGAAGTGAACTCTAAACAGGTCCCGTCGAATTCTTCTGTCCAGATGT TAGAACCCAGAACTCGTAAAAGTCCAAGATCGCTGTCAAGACCAGACTATGGTAAGACAGGATCTGTAATGCCGACCCCCGTGCATTCGAGAAAGGTTAC CCGTCCTGAATACGAGGCTGAACGTGGCGATGGTAAGTCAATCTCGAAACGAAGAAAGACAAGAAATACGGCCTTGCACGAGGATCCTAGGAAACATAAG AAGAGCACCACCCCAAAGGCTGGCACTCCACAAGCTGCAATCAGGGGAGCCATGGGAGCTACCCAACAGGGTCCGTCCAACATTGGAGATCTCTTCTCAG AAGGCTCACTCAATCCATATGAAGATGATCCCTACGCTTTCAAGTAG
AA sequence Show only first row Show all	>Lus10036517 pacid=23174588 polypeptide=Lus10036517 locus=Lus10036517.g ID=Lus10036517.BGIv1.0 annot-version=v1.0 MKKLAFPSLRSFDHFKAAAGPARSFSHPSRSSSDHMSLGSFTNLKVAAEKLVKEQASLKTDLETANNKLKKSAENVRALEEKLQNAFHENVKLQVERKEN EKLWNGLESRFCLTKSMCDQLSETLDRLAVQLQDAEKDKAFFECKLSESSNAIDILNQQIHHLSLKITSTEETVTTREKELMDLRTEDKEKCDVFAEEKY RLTNLIVEKDSTIKLSEAGLAESQSHTRILHSKLENLHLELKLKDDKIKNSSIAVQNLEKEKSDLQLTKERISNDLDTSRDEIRKLESFINVMTAQLVQL DKRSLDFTKNFDLLNSLYDTSSKLIEEEKDLASRHATKQYDMLHNQVVVVTSEREEMQLTIKELNDEIYELQKAQDSIREMLAGEQKTAAQKISKLEAES KALEKKKDVTEFILLNLEEKFAALSESSRSSEEEMERLLQKLARLEEENRYSTGKLQADMQEKVDEIDNLQKEFAKHDQEINSWEKKVDQLQNKVQEKEE LILQGKESERKLEDQINEVKASLTTAESRLVEVREQCEVMLDCKEQELSKHLREISTGNDQAIAAIRTKYEDGKAEIINMEKEKVNKLLHDMERKYDQKI SEQKEDSRQQLLHIQDEHAALITKIQQENETKETSLKAHHSEQLKHAELQAVEGQREKILQLRNEHEVQMKALRTQYEDVCKKLQDELDIQKSKEDRQRA LLQMQWKVMSDKQDNNDAEVNSKQVPSNSSVQMLEPRTRKSPRSLSRPDYGKTGSVMPTPVHSRKVTRPEYEAERGDGKSISKRRKTRNTALHEDPRKHK KSTTPKAGTPQAAIRGAMGATQQGPSNIGDLFSEGSLNPYEDDPYAFK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	0	1
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10041143 [exp]	1.0	0.9149
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	4.2	0.9113
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10033131 [exp]	4.2	0.9010
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	4.9	0.9043
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	6.3	0.9003
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Lus10019954 [exp]	9.6	0.8929
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	10.2	0.8759
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	10.9	0.9143
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	14.1	0.8690
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	14.7	0.8988

Compare expression of checked genes

Lus10036517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.