Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23410 115 / 2e-31 TET5 tetraspanin5 (.1) AT3G12090 101 / 5e-26 TET6 tetraspanin6 (.1) AT3G45600 83 / 3e-19 TET3 tetraspanin3 (.1) AT2G19580 80 / 6e-18 TET2 tetraspanin2 (.1) AT5G60220 75 / 6e-16 TET4 tetraspanin4 (.1) AT5G46700 72 / 3e-15 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) AT2G23810 69 / 6e-14 TET8 tetraspanin8 (.1) AT4G28050 68 / 1e-13 TET7 tetraspanin7 (.1) AT1G18520 66 / 4e-13 TET11 tetraspanin11 (.1) AT4G30430 66 / 5e-13 TET9 tetraspanin9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041411 [exp] 179 / 2e-57 AT4G23410 257 / 5e-87 tetraspanin5 (.1) Lus10023338 [exp] 86 / 2e-20 AT3G45600 347 / 1e-121 tetraspanin3 (.1) Lus10038473 [exp] 85 / 1e-19 AT3G45600 446 / 9e-160 tetraspanin3 (.1) Lus10017336 [exp] 79 / 2e-17 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10001668 [exp] 77 / 7e-17 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Lus10007998 [exp] 76 / 3e-16 AT2G19580 369 / 6e-130 tetraspanin2 (.1) Lus10019965 [exp] 75 / 5e-16 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10023216 [exp] 74 / 1e-15 AT2G23810 376 / 1e-132 tetraspanin8 (.1) Lus10040551 [exp] 72 / 3e-15 AT2G19580 364 / 3e-128 tetraspanin2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220300 [exp] 139 / 2e-40 AT3G12090 399 / 2e-141 tetraspanin6 (.1) Potri.008G041600 [exp] 138 / 3e-40 AT3G12090 397 / 2e-140 tetraspanin6 (.1) Potri.009G015100 [exp] 89 / 4e-21 AT3G45600 388 / 7e-137 tetraspanin3 (.1) Potri.003G093000 [exp] 81 / 2e-18 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G177900 [exp] 81 / 3e-18 AT2G23810 317 / 4e-109 tetraspanin8 (.1) Potri.018G099800 [exp] 77 / 6e-17 AT2G23810 322 / 3e-111 tetraspanin8 (.1) Potri.001G141400 [exp] 76 / 2e-16 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1) Potri.006G150400 [exp] 73 / 2e-15 AT2G19580 367 / 5e-129 tetraspanin2 (.1) Potri.015G055700 [exp] 66 / 7e-13 AT1G18520 196 / 6e-62 tetraspanin11 (.1) Potri.001G107200 [exp] 63 / 6e-12 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10036518 pacid=23174569 polypeptide=Lus10036518 locus=Lus10036518.g ID=Lus10036518.BGIv1.0 annot-version=v1.0 ATGGAGAGGCTGCGAGAACTTCCTCCATACCCCGCTCTTGGTGCTGGGCTTCATCGTGCTGGTGATCTCCTTGGCTGGGTTCATCGGCGCATGCTTCCAC GTGGCGTGGGCGCTGTGGGTGTACCTGGTGGCGATGTTGTTCACGATCATGGCCCTCATCGACCTGACCGTGTTCGGGTTCGTGGTCACGAGTCTGGGCG GTGGGGTAGAGGTTCTGGGGAGGGCTTACAGGGAGTATATGCTGCAGGATTACTCTCCCTGGTTGAGGAAGAGGGTTCAGGAACCTCAGTACTGGAAGGC TGGTGCTGCAAGCCTCCAACGACGTGCGACTACAACATGGTGACGAAGGTGGCGCAGGAGCAGGACTGTTACAAGTGGACCAACGCGGCGGAGATGCTGT GCTACGAGTGCGACTCGTGCAAGGCTGGTGTGTTGGAGGAAGTTAGGAGGGACTGGCGGAAGTTGACGGTCCTGAACGTGGTGGTGCTAATCATCCTCAT AGCACTTTACTCCGTGGGATGCTGCGCCTTCCGCAACACACAGCGTGCCGAGTCCGATTACCCTTACGGCATCAACCGCATGAGCAAGATCCGTCCTCGT TGGGATTACCATTGGTGA
AA sequence Show only first row Show all	>Lus10036518 pacid=23174569 polypeptide=Lus10036518 locus=Lus10036518.g ID=Lus10036518.BGIv1.0 annot-version=v1.0 MERLRELPPYPALGAGLHRAGDLLGWVHRRMLPRGVGAVGVPGGDVVHDHGPHRPDRVRVRGHESGRWGRGSGEGLQGVYAAGLLSLVEEEGSGTSVLEG WCCKPPTTCDYNMVTKVAQEQDCYKWTNAAEMLCYECDSCKAGVLEEVRRDWRKLTVLNVVVLIILIALYSVGCCAFRNTQRAESDYPYGINRMSKIRPR WDYHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23410		TET5	tetraspanin5 (.1)		Lus10036518 [exp]	0	1
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10005093 [exp]	1.4	0.8546
AT4G02420			Concanavalin A-like lectin pro...		Lus10016226 [exp]	1.7	0.8439
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	4.6	0.8787
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10031707 [exp]	4.9	0.8047
AT5G19120			Eukaryotic aspartyl protease f...		Lus10041004 [exp]	12.0	0.6785
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	15.2	0.7801
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	18.5	0.7709
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	19.7	0.7709
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	19.8	0.7754
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	20.7	0.7709

Compare expression of checked genes

Lus10036518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.