Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53000 526 / 0 TAP46 2A phosphatase associated protein of 46 kD (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041409 [exp] 729 / 0 AT5G53000 573 / 0.0 2A phosphatase associated protein of 46 kD (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016500 [exp] 573 / 0 AT5G53000 525 / 0.0 2A phosphatase associated protein of 46 kD (.1) Potri.015G012200 [exp] 550 / 0 AT5G53000 501 / 8e-178 2A phosphatase associated protein of 46 kD (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04177 [flax] [poplar] TAP42 TAP42-like family
Representative CDS sequence Show only first row Show all	>Lus10036520 pacid=23174467 polypeptide=Lus10036520 locus=Lus10036520.g ID=Lus10036520.BGIv1.0 annot-version=v1.0 ATGGGCGAGCTGAAGATGGAGGATGTTACGCTCCCATCGCTCTTCTCCCAAGCTCGGAACATCCATTTCAGCGCTACCGAGTCCACTGCTGATCAAGACG CGATAAGGAAAGGGTGCGAGGCATTGGAGAAGTGCGAGGAAATGGTGAATAAGCTAGGTTTGTTTTCGGCTAATGAGACGAAAGAAGATATTGGCACCAA CAATCTTAAATACATCCTGGTACCATTTTACCTTGCTGAGTTGACTGAGAAAATTTCTCAGGGTGATAGGATTCAAATACTTAAATCCTCCCAAGCAAAA CTAAAGGAATTCCTTTCATTCTGTGAATCGATGGAACTTGTACCAGAGGAGGAGCTGCAGGCATCAGCGCAAGGACGTTCAAATGCCTCTGTTGATCGAA GGGCTCAAAAGATTGCTAGGTTTAAGCGCCAAAAAGCTGCAGAAGCAAAGCTTCTGGAAATAAAGGAGCGGAAAGAGCGGCGTGGTCGTTCCACTAAGGC GTCTGCATTGTCTTCGCCTGTTGAAGCTGGAGAGGAAGATCTGCTGGATGATGATGGTGAAGAAGAACGGGAGGCCTGGCTTACGACCATATCACTAGCT ATCTGCAAGGCTATTGATTTGCTGGAAATGTTGAAGAAAGAAGAGGAAATGCTTTCTGCTGTCAGGGAAAGACAATTGAAGGAAGGAGATAAGGAGTTTT CTCAGGCTGTCCTGGATGAACGAGTGCATAAAGCAGAATCGTGGCATCGTGGTGCGGCGACTCGAGCACAGTATACAAAGCCTTCCATACCGATCACATG TGCTACTTTTGCTCAAGATGTGCTAGAAGGACGGGCGAGTGTTTCGGAGGCACATGATCACAAGCATCAGCCAATGATATTTGGACCAGCTAGCCTCATT AATTCGCGGCCAACGAGCGAGAGGGATAGGATGGCAGCGCAGGTGTTCCAACCTGGTCACAGGTTGCCAACGATGAGCATAGAGGAGGCTGGGATGAAGG AGATGGAGATGATGAACAAGTGGCAAGAGAGGAATGTTAAATACATGGAAGAAGCCAACTCCGCATGGTACAAGGATAACAGCATCGGTAAGCCGAGATC AGGTGAAGAGGAAGAGGATGAAGATGACGATGCTGCGGTGGAAAAGGCAAGAGCTTGGGACGATTGGAAAGATGAAAACCCTCGTGGTGCCGGGAACAAG AAGCTCACCCCATGCGGTTAA
AA sequence Show only first row Show all	>Lus10036520 pacid=23174467 polypeptide=Lus10036520 locus=Lus10036520.g ID=Lus10036520.BGIv1.0 annot-version=v1.0 MGELKMEDVTLPSLFSQARNIHFSATESTADQDAIRKGCEALEKCEEMVNKLGLFSANETKEDIGTNNLKYILVPFYLAELTEKISQGDRIQILKSSQAK LKEFLSFCESMELVPEEELQASAQGRSNASVDRRAQKIARFKRQKAAEAKLLEIKERKERRGRSTKASALSSPVEAGEEDLLDDDGEEEREAWLTTISLA ICKAIDLLEMLKKEEEMLSAVRERQLKEGDKEFSQAVLDERVHKAESWHRGAATRAQYTKPSIPITCATFAQDVLEGRASVSEAHDHKHQPMIFGPASLI NSRPTSERDRMAAQVFQPGHRLPTMSIEEAGMKEMEMMNKWQERNVKYMEEANSAWYKDNSIGKPRSGEEEEDEDDDAAVEKARAWDDWKDENPRGAGNK KLTPCG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53000		TAP46	2A phosphatase associated prot...		Lus10036520 [exp]	0	1
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	6.7	0.8466
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009600 [exp]	7.0	0.7897
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	9.6	0.8410
AT3G02555			unknown protein		Lus10027224 [exp]	15.3	0.8293
AT3G54440			glycoside hydrolase family 2 p...		Lus10039519 [exp]	15.3	0.8367
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	21.4	0.8228
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10032883 [exp]	24.5	0.8349
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10033467 [exp]	25.0	0.7944
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	27.7	0.8155
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	28.6	0.8159

Compare expression of checked genes

Lus10036520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.