Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07950 391 / 1e-137 rhomboid protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041408 [exp] 535 / 0 AT3G07950 425 / 6e-151 rhomboid protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220900 [exp] 458 / 6e-164 AT3G07950 352 / 3e-122 rhomboid protein-related (.1) Potri.008G041100 [exp] 442 / 6e-158 AT3G07950 350 / 2e-121 rhomboid protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF08551 [flax] [poplar] DUF1751 Eukaryotic integral membrane protein (DUF1751)
Representative CDS sequence Show only first row Show all	>Lus10036521 pacid=23174664 polypeptide=Lus10036521 locus=Lus10036521.g ID=Lus10036521.BGIv1.0 annot-version=v1.0 ATGAGTGTTCCCGCCATCGCTGGGGGATCGAGCTTGTTCACCGGCTTTACGCGATTATGCAAGGGCTTGGCCGTGGTCCTCGTTGCCGGCCACCTTGTAG TTCAGACTTTGCCTTTCACGGTTAATTATCTTGCCCTCATTCCCGCCAGGACTATACCTTTTGCATGGAACCTCATAACAGCTGGCTACGTTGAGCAATC AATATTTGGAGTGGTAGCCAGTACTTTATGCCTTCTTGTTATGGGGAAGTTGCTTGAACCGGTTTGGGGTTCCAAAGAGTTCTTGAAATTTATCTTCATA ATTAACTTCCTTACCTCAGGCTGTGTGTTCATCACTGCCATCACTTTGTATTACATAACGACTCAGGAAATCTACCTTTACATGCCTATATCTGGTTTCC AAGGAGTGGTGGCCGGTTTCTTGGTTGGCATAAAGCAAATTATACCTGACCAGGAGCTATCTGTATTAAGAATAAAGGCGAAGTGGTTCCCTTCTATAAT GCTCTTGGTGGCAATTGCGGCTAGCTTTTTCACAGTTGAGTCTGCAAAATACCTCCCGACACTCATCTTTGGCACATACACGGGCTGGATATACTTGAGA TATCAACAGAGAAGACCAGAAACAATGCTAAAGGGCGACCCTAGCGACGATTTCGCCTTCTCCAGTTTCTTCCCTGATTTCCTTAGACCGGTTATCGACC CAATGGCATCGATTTTCCACCGAATGCTTTGCGGAAGAGCTCAATTTCCAAATGAGCCCCAGGGTTACCAATTGGGAGGTACAGCGCTGCCAGGATCTGA CCCAATCGAAGCATCGAGGAGGAGAGAAAAAGGAGCACGAGCACTGGAAGAAAGATTGGCAACTGAGAAGCTGGCTGCGGCACGGAGCATTGAAGACTTG AAAAAAGATGCCTCTGAGAGTGTATAG
AA sequence Show only first row Show all	>Lus10036521 pacid=23174664 polypeptide=Lus10036521 locus=Lus10036521.g ID=Lus10036521.BGIv1.0 annot-version=v1.0 MSVPAIAGGSSLFTGFTRLCKGLAVVLVAGHLVVQTLPFTVNYLALIPARTIPFAWNLITAGYVEQSIFGVVASTLCLLVMGKLLEPVWGSKEFLKFIFI INFLTSGCVFITAITLYYITTQEIYLYMPISGFQGVVAGFLVGIKQIIPDQELSVLRIKAKWFPSIMLLVAIAASFFTVESAKYLPTLIFGTYTGWIYLR YQQRRPETMLKGDPSDDFAFSSFFPDFLRPVIDPMASIFHRMLCGRAQFPNEPQGYQLGGTALPGSDPIEASRRREKGARALEERLATEKLAAARSIEDL KKDASESV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	0	1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	2.2	0.9491
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	2.2	0.9335
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	2.4	0.9380
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	3.2	0.9393
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	4.4	0.9015
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	4.9	0.9358
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032190 [exp]	5.7	0.9316
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	6.5	0.9322
AT1G61790			Oligosaccharyltransferase comp...		Lus10018363 [exp]	6.7	0.9198
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10039054 [exp]	6.9	0.9094

Compare expression of checked genes

Lus10036521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.