Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39190 924 / 0 ATATH8 Protein kinase superfamily protein (.1.2) AT5G24970 304 / 2e-91 Protein kinase superfamily protein (.1.2) AT3G24190 283 / 2e-83 Protein kinase superfamily protein (.1) AT1G79600 281 / 3e-83 Protein kinase superfamily protein (.1) AT4G31390 279 / 8e-83 Protein kinase superfamily protein (.1.2) AT1G71810 268 / 2e-78 Protein kinase superfamily protein (.1) AT3G07700 206 / 3e-56 Protein kinase superfamily protein (.1.2.3) AT5G64940 196 / 2e-52 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G05200 128 / 7e-31 Protein kinase superfamily protein (.1) AT5G50330 117 / 1e-27 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041406 [exp] 1483 / 0 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023508 [exp] 684 / 0 AT2G39190 487 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10040390 [exp] 427 / 1e-141 AT2G39190 322 / 1e-101 Protein kinase superfamily protein (.1.2) Lus10020103 [exp] 275 / 5e-81 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 270 / 5e-79 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 267 / 1e-77 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 243 / 2e-69 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10032616 [exp] 248 / 1e-68 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 247 / 3e-68 AT3G23940 1148 / 0.0 dehydratase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221000 [exp] 1127 / 0 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G275600 [exp] 285 / 7e-85 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G050700 [exp] 284 / 2e-83 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 276 / 3e-81 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G000100 [exp] 271 / 2e-79 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 266 / 1e-77 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 212 / 6e-58 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 204 / 3e-55 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 195 / 2e-52 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G061300 [exp] 124 / 2e-29 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10036522 pacid=23174423 polypeptide=Lus10036522 locus=Lus10036522.g ID=Lus10036522.BGIv1.0 annot-version=v1.0 ATGGTGGGGGCGACGGCAGCTTCTGCCGTGGTGGCGCCGTCCGTGTCGACCATTCGGGCTGCTGCTCTCGGAAGCAGGAAGCTGTCCCGAACGCCGACGC ATAAGGGAAAGCCTTCGCGGGAAGTGAAGGCTATAGGGAATTTCAGTCACTTCGGGGAAGTAGTGCGGAAGGATTTTGCATTCTTGAAGAAAGGAATTGG TAAGGGAATCAATTGGGCGAACGATGTTTTTAAGCTTCCGCAAGTGGCCAAGGTAGTTGATGATGCTGTCTGGATGCGGAACCTCGAGGATCCCGAAGCC GCTACTATGGAGAAGCAAACTTGGCCTCAGCCTTACTATTCAGAACTTTCTGGTGTAGATTTACTCATGGCTGACCTCCAAGCCCTGCAAACCTATGCCA GTTACTTCAGCTACTTGTCCAAGACGTGGTCGAAACCGCTTCCTGAAGTGTATGATCCGGAGGCTGTTTCTGATTACTTCAATTGCAGGCCTCATGTGGT TGCCTTCCGGCTTCTTGAGGTGTGCTCTGCCTTTGCTTCTGCAACACTACAGGTTCGGGCTTCACGTGTTAGAAAGATTCTGGGCTCAAGTCTTGATAGT GATCTCGACATAAATGGAAACACCTCACAATACAATTTTGGAATGGTGTTAAAAGAAACGATGCTTAACTTAGGTCCCACTTTTATAAAAGTTGGTCAAT CCCTGTCCACAAGACCAGACATAATTGGTTCCGAAATTTCAAAGGCTCTTTCTGGGTTGCATGATCAAATACCTCCCTTTCCTACTACCATTGCAATGAA AATCATTGAGGAGGAGCTAGGAGCTCCAATTGCATCGTCTTTTAGCTACATATCTGAGGAACCTGTTGCTGCAGCATCATTCGGTCAGGTCTATCGTGGA CAGACTCATGATGGTCGTATTGTTGCTGTGAAAGTTCAACGTCCTGATCTCCGTCATATTGTAGTTCGAGATATCTATATTCTCCGAATCGGGCTGGGGC TGTTGCAAAAGATTGCGAACAGGAAAAGTGACCTTCGACTCTATGCTGATGAGTTTGGTAAAGGGTTGGTTGAGGAATTAGATTACTCTATTGAAGCTGA CAATGCATCCAAATTCATGCATTCTTCTTTCACTTTTATGCGTATTCCAAGGGTTTACCGAGATTTAAGCCGGAAAAGAGTTCTGACTATGGAGTGGGTA GTTGGTGAAAGTCCAAATGATTTACTCGCTGTATCTACTTCCAATGCCAATGATAATGGTTCAGAAAGAAAGAGGACTGAAGCAAATAAGCATTTACTTG ATCTGGTTAGCAAAGGTGTCGAAGCATGTCTCGTTCAACTTCTTGAAACAGGTTTGCTGCATGCAGACCCACATCCAGGAAACTTAAGATACATTTCATC AGGACAAATAGGGTTCTTGGACTTCGGTTTACTTTGCCAAATGGAGAGGAAGCATCAATTTGCCATGCTTGCATCAATAGTACACATTGTAAATGGTGAT TGGGGTTCGCTTGTACGTTCTCTTATGGACATGGATGTAGTTAGGCCAGGAACTAATATCAGGCGTCTTACAATGGAACTAGAAGACGCCTTAGGAGAAA CAGAATTCAGAGGTGGAATTCCTGATATCAAGTTCAGTAGGGTTCTAGGAACAATATGGTCTGTGGCTCTCAAGTATCATTTCCGCATGCCTCCATATTA CACCCTCGTTCTACGTTCCCTTGCATCTTTGGAAGGTGATCTTGGTGTCTCAGGTTTGGTTGTAGCTGCCGATCCAAGTTTCAAGACGTTTGAAGTTGCA TACCCCTATGTTGTTCGGAAACTACTAACTGAAAATTCAGCTGATACCAGGAAAATTCTGTATTCGGTGATCCTAAACAAGAGGAAAGAATTCCACTGGG AGAGACTTAATCTTTTCGTAAGAGTAGCATCGACCAGGAAATTTTTAAACCGGGCGGTAGCATCAAAGAGTGAAAGGTCCACTGACTATCTGCCAAACAG ATCAAATGCTGTTATTGACGCTGCACGCTTGGTCTTGAAACTTTTACCATCCAAAGACGGTGTTGTTCTTAGGAAACTTCTAATGACGGTTGATGGGGCT TTGTTAATCCGAGGATTGGTTTCCAAAGAAGCAATGCCCTTCAGACATCAGTTTTGCAAAATCATCGCTGATGTCATCTACCAATGGAGTGCTCAAGCTC TTGGACAACACATTCCAGAAGTTAAGTACAATAGCTCCAAGCCATCTTCCAGATCATCCATGTCACTTGCTGATTATCAAGCAATTCTTGGAGATCTAAG GCTAAAAGTGATCTTTCTAAGGATACTAGACTCTGCAAGGAAAGATCCAGTACTGATGCTTAGGTTGTGCTGGACTTCTTTTGTGATGATGGTCACTGCC TCGGCAGTCGCATGCTATCGAGTTGTGGTCTTGCTGTCTGAAGCTTTTTTGAGTTCTCTTGCTCCGAAGCGAGTGGCATTTACTGCTTGA
AA sequence Show only first row Show all	>Lus10036522 pacid=23174423 polypeptide=Lus10036522 locus=Lus10036522.g ID=Lus10036522.BGIv1.0 annot-version=v1.0 MVGATAASAVVAPSVSTIRAAALGSRKLSRTPTHKGKPSREVKAIGNFSHFGEVVRKDFAFLKKGIGKGINWANDVFKLPQVAKVVDDAVWMRNLEDPEA ATMEKQTWPQPYYSELSGVDLLMADLQALQTYASYFSYLSKTWSKPLPEVYDPEAVSDYFNCRPHVVAFRLLEVCSAFASATLQVRASRVRKILGSSLDS DLDINGNTSQYNFGMVLKETMLNLGPTFIKVGQSLSTRPDIIGSEISKALSGLHDQIPPFPTTIAMKIIEEELGAPIASSFSYISEEPVAAASFGQVYRG QTHDGRIVAVKVQRPDLRHIVVRDIYILRIGLGLLQKIANRKSDLRLYADEFGKGLVEELDYSIEADNASKFMHSSFTFMRIPRVYRDLSRKRVLTMEWV VGESPNDLLAVSTSNANDNGSERKRTEANKHLLDLVSKGVEACLVQLLETGLLHADPHPGNLRYISSGQIGFLDFGLLCQMERKHQFAMLASIVHIVNGD WGSLVRSLMDMDVVRPGTNIRRLTMELEDALGETEFRGGIPDIKFSRVLGTIWSVALKYHFRMPPYYTLVLRSLASLEGDLGVSGLVVAADPSFKTFEVA YPYVVRKLLTENSADTRKILYSVILNKRKEFHWERLNLFVRVASTRKFLNRAVASKSERSTDYLPNRSNAVIDAARLVLKLLPSKDGVVLRKLLMTVDGA LLIRGLVSKEAMPFRHQFCKIIADVIYQWSAQALGQHIPEVKYNSSKPSSRSSMSLADYQAILGDLRLKVIFLRILDSARKDPVLMLRLCWTSFVMMVTA SAVACYRVVVLLSEAFLSSLAPKRVAFTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	0	1
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	1.0	0.9161
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	2.4	0.8878
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	2.8	0.8828
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	3.5	0.8781
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	3.7	0.8596
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	5.2	0.8451
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	5.7	0.8560
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	6.2	0.8536
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	6.7	0.8592
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	6.9	0.9002

Compare expression of checked genes

Lus10036522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.