Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47540 434 / 7e-152 Mo25 family protein (.1) AT4G17270 411 / 5e-143 Mo25 family protein (.1) AT2G03410 355 / 5e-121 Mo25 family protein (.1) AT5G18940 215 / 3e-66 Mo25 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041405 [exp] 683 / 0 AT5G47540 446 / 3e-157 Mo25 family protein (.1) Lus10010497 [exp] 439 / 9e-154 AT5G47540 594 / 0.0 Mo25 family protein (.1) Lus10017565 [exp] 438 / 2e-153 AT5G47540 593 / 0.0 Mo25 family protein (.1) Lus10027342 [exp] 430 / 4e-150 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 391 / 5e-135 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10034014 [exp] 208 / 2e-63 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10012762 [exp] 193 / 2e-57 AT5G18940 512 / 0.0 Mo25 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222800 [exp] 472 / 7e-167 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.014G162100 [exp] 472 / 1e-165 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.006G014800 [exp] 432 / 3e-151 AT5G47540 569 / 0.0 Mo25 family protein (.1) Potri.016G011100 [exp] 420 / 2e-146 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.010G155400 [exp] 416 / 5e-145 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.019G057100 [exp] 325 / 1e-108 AT5G47540 411 / 5e-144 Mo25 family protein (.1) Potri.010G155300 [exp] 220 / 2e-69 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.010G028700 [exp] 221 / 2e-68 AT5G18940 469 / 5e-167 Mo25 family protein (.1.2) Potri.008G198900 [exp] 211 / 2e-64 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2) Potri.016G011300 [exp] 150 / 1e-43 AT5G47540 262 / 1e-88 Mo25 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08569 [flax] [poplar] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Lus10036523 pacid=23174516 polypeptide=Lus10036523 locus=Lus10036523.g ID=Lus10036523.BGIv1.0 annot-version=v1.0 ATGAACGGCAGAGGCGGTGGTGGGATTCGGATGCCATATAGAGAATCATCGCTAACAACAACAACAACAACAACACCAACACCAACAGAGTGCACATTGG TGGTAGTTTGCGTGACGATGAAAGGACTATTCAAACACAAGAATCGGACTCCGGTCGAGCTCGTCCAATATGCCCGCGACCTCCTCCTCTTTGTCGATCG CAATTCTCCCGACGTGCCTAAGAAGAAGCGCGACGATAAGGTTCCTCCCTTTCACCCCCGAGCTACTATATCCATTGATATAAATTCTGATTTCCAGAAC GTTGCTAGCGAGATTGCGGAGCTGGGGAAAGTGCTAGTCGAAATGCGGACGATTCTATTCGGTGAAGGTCAGGCTGAGCCCAATGCTGATGCTTGTTCAC AAGTGACGCAAGAATTCTTCAGGGAGGATACGTTACGAGTCCTCATTGGCTGCCTCCCCAAACTCGGCCTTGGGCCTCGTCAGATTGCGGCGAGTGTGAT AACAAATTTGCAGAAGCAACGCGTCCAAGGACGTCTAATAGCTCCCGAGTACATGGAGAGTAATTTGGATCTTATGGAAATTCTGCTACCTGGTTATGAA GATGCTGATATCGCATTAACTTATGGCTCGATTTCGAGAGACCTGATATGCCATCAAGTTGTAGCTAAGTACGTTCTTGAATCAGCACATATGCCTAAGT TCTTTACCTACGTTCAGCTCCCGAATTTTGAAATCGCATCAGTTGCTCAAGCTACCTTTAAAGAACTTCTGACAAGACACAAATCAACTGTTGCTGAATT CCTTTCAAACAGTTATGACTGGTTTTTCCGGGAGTACAATTCGCAGTTGCTTGAATCTAAGGAGTACATTACTCGAAGGTACGCTGTCAAGCTGTTGGGG GACATGCTGCTTGATAGATTGAATGCAGCTGTAATGGTTCGATATGTGAGCTCGTTGGATAACATGAGGATACTGATGAACCTTTTCAGAGAAGAAAAGA AGTCGATACAGATGGAAACTTTTCATGTGTTTAAGTTGTTTGTGGCGAATCAAAGTAAGCCTCCTGAGATCATCAGTGTACTGGCCAAAAACAAGAACAA GTTGCTGAGGTTCTTAGCTGGTTTAAAGACTGAGAAAGAGGATGAACAATTTGAAGCAGACAAATCTCAAGTAATTAAAGAGATTGCAAGCCTTGAAGAC AAATCTCAAGTGATTAGAGAGACTGCAAACCTAGAAATAAATGATCGTCCAACCTCTGAATTAGATAACGAAGCTGAATCCTAA
AA sequence Show only first row Show all	>Lus10036523 pacid=23174516 polypeptide=Lus10036523 locus=Lus10036523.g ID=Lus10036523.BGIv1.0 annot-version=v1.0 MNGRGGGGIRMPYRESSLTTTTTTTPTPTECTLVVVCVTMKGLFKHKNRTPVELVQYARDLLLFVDRNSPDVPKKKRDDKVPPFHPRATISIDINSDFQN VASEIAELGKVLVEMRTILFGEGQAEPNADACSQVTQEFFREDTLRVLIGCLPKLGLGPRQIAASVITNLQKQRVQGRLIAPEYMESNLDLMEILLPGYE DADIALTYGSISRDLICHQVVAKYVLESAHMPKFFTYVQLPNFEIASVAQATFKELLTRHKSTVAEFLSNSYDWFFREYNSQLLESKEYITRRYAVKLLG DMLLDRLNAAVMVRYVSSLDNMRILMNLFREEKKSIQMETFHVFKLFVANQSKPPEIISVLAKNKNKLLRFLAGLKTEKEDEQFEADKSQVIKEIASLED KSQVIRETANLEINDRPTSELDNEAES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47540			Mo25 family protein (.1)		Lus10036523 [exp]	0	1
AT1G72490			unknown protein		Lus10037689 [exp]	6.3	0.9799
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031145 [exp]	10.3	0.9864
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10039979 [exp]	13.3	0.9516
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	16.6	0.9850
					Lus10002921 [exp]	16.7	0.9689
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10029584 [exp]	16.9	0.8862
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	18.1	0.9598
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	20.6	0.9841
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10039551 [exp]	22.8	0.9713
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	24.0	0.9826

Compare expression of checked genes

Lus10036523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.