Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39180 831 / 0 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT3G09780 815 / 0 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT3G59420 328 / 1e-99 ACR4 crinkly4 (.1) AT5G47850 243 / 2e-69 CCR4 CRINKLY4 related 4 (.1) AT3G15890 179 / 6e-50 Protein kinase superfamily protein (.1) AT5G28680 187 / 2e-49 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT1G67720 186 / 9e-49 Leucine-rich repeat protein kinase family protein (.1) AT1G52540 174 / 3e-48 Protein kinase superfamily protein (.1) AT3G58690 174 / 7e-48 Protein kinase superfamily protein (.1) AT1G01540 175 / 2e-47 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041404 [exp] 1461 / 0 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10015956 [exp] 328 / 1e-99 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 327 / 2e-99 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10029170 [exp] 221 / 2e-61 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10040663 [exp] 193 / 1e-51 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 186 / 2e-49 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10001937 [exp] 177 / 3e-48 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10017478 [exp] 183 / 5e-48 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10037051 [exp] 183 / 1e-47 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221200 [exp] 1017 / 0 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G089200 [exp] 867 / 0 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.017G029900 [exp] 315 / 1e-94 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 309 / 3e-92 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.019G078300 [exp] 233 / 7e-66 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.008G068700 [exp] 218 / 5e-60 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.004G105200 [exp] 189 / 1e-50 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.011G058300 [exp] 180 / 2e-50 AT5G46080 327 / 4e-111 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 185 / 3e-49 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.010G052800 [exp] 187 / 4e-49 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10036524 pacid=23174547 polypeptide=Lus10036524 locus=Lus10036524.g ID=Lus10036524.BGIv1.0 annot-version=v1.0 ATGGGAATCCGGGCATACCTCTACGCTTCTTTATCTTTGGCTGCTCTTTTCCTGATCCTAAGGCTTCCGATCACAGCTTTCGGGTACGGATCTTCTGGCC CGGTTGCAGCTGCATTTGGCAGTGATGGCTTCTTCTGCGCCATTGATGCAGGAGGGAAACAAGAGATCCTATGTTGGGATAAAGATGACACTTTCACTGC CTCATCATCATCATCCGGTTACTTCGCTTCCTTGCCTACTATGGCTTCCCTCTCCGGCGGGGAAGAGTTCCTCTGCGGCATCACGTCGAACACTTCCCAG GCATTCTGCTTTAAGATGTCGGATCCAGGTACTAATCTTGTCCCGACACGTTTTCGGTACACTTCTTACTCCAAGATTGCAGCAGGAAAGAAACACGCTT GTGGGATTCGAGGGTCTTATTACTCCGACGGGTTGGAGGAATATGGTGGAATTGATTGTTGGGAATTCAATCAATCAATTTCCAATTCTTTCTCTTCTTC TTACGTCGATAGCCTTTTGTTCAAGAACATTGTCGCTGGAGACGACTTTAGCTGTGGGGTTGTTAAAGGGACTGGGGTGATTTGCTGGGGACCCAGATCA GGAAAAATGGATATTCCAACTTTGTCAAGTGATTTTGAGATTTTGGCCTCAGGAAAAAGCTCAGTATGTGGGGTTTCTAGCCACAGCAGAGAAGTTCAAT GCTGGGGTGAGGCCAGTGAATTTGGTTCCTCACCAACTTCCGAGACTAAATTTGTTGATATTACAACCGGTGGTGATTATTATTGTGGGATTCGTGAGGA TAATCACGAGGTTGAGTGTTGGGGAAACACTGTTAATTCCGTTCAAAAAGGTTCTGGATTTCTAGCCATTGCTTCATCAGATTCATCTGCTTGCGGGATT AGAGAAGTTGACCTTGTTCTAGACTGCTGGAATGTTCGTGGAAAGACACCTCCAGATTACAGGCCTCCTTTGCAGCTGTGCAGCCCTGGGATATGCTCAT CGGCCGAATCATGTCCTGACCGAATGTTTATATTCAATGCAAGCATACTGAATGAGCCAGAGTTGTCCAATGTTTGCGCTAGAAAATATCTCAAGATATG TTTGCCTTGTGGAACTAACTGTTCCGAGGGCTATTTCCCTTCAAGTGTGTGCACTAAGAATGCAGACAGGATATGCACTGCTTGTTCACTTTGCCAGAAC AGCTCTTGTTGGGATATCTGTGGCCATCCGTCTCTACCACATAATAATCAGATGGAGCAACGGCAGATTAAGAAACTTGCATTCATCATTGGCATTTCGG TGGCTGGTTTCTTGTTACTTTTCACTGCAGGATGCTGTCTCATTTTCCAGATTAAAAGGACTCGTAGCCAGAAAACGAAATGCTGTCATTGCATTTTCTG CATGAGCGAGCCAGTTGTGGAGGCTGATCCGGATCACGATCCGGAACCCCCCCTTCCTTTCACTGCATTGTACGTAGGGGATGCTCAAGTGTTCCGGCTA TCTGAGCTTAAAGATGCCACACATGGTTTCAAGGAGTTCAATGAGCTAGGCAGAGGGAGCTTTGGCTTCGTTTACAAGGCTGTACTGTCCGATGGCAGGC ATGTGGTAGTGAAGAGGGCTAATGCAACCACCATAATCCACACCAACAGCCGGGAATTCGAATCGGAGCTCGAAATCTTATGTGGGTTAAGACATGCTAA CATTGTGAACCTGCTGGGTTATTGTGCTGAGATGGGAGAGAGGTTAATGGTATACGAGTACATGACTCATGGAACACTGTACGACCATCTACATGGGGAG CTTTCTCCACTTGATTGGAGCTTAAGGCTAAAAATATCATTGCAGGTGGCACGTGGGCTTGAATACCTGCACAAGGAAGTGATTCCAAGCATAGTTCATC AAAACTTGAAGACGTCGAAAGTGTTGTTGGATTCCGGATGGGGGGCGAGGATTGCTGACTTTGGATTCTCACATGGGAATGAGCACAAGGAGTTTGATGG AAACAAGGAGAGTGATGTGTACAGTTATGGGATTATTCTACTGGAGATATTGAGTGGAAGGAAAGCTTACGATAGAGAGTGCAACCCACCGGGTATTGTG GAATGGGCATTACCTTTAATCAGGTCAGGGAAGTCAGCCGCCATTATTGACAGGAATGTGGCTTTGCCAAGGAATGTAGAGCCATTGCTTAAAGTTGCAG ACGTTGCAGAGGCTGCTCTCAAGGAGAATCCAAGCGAACGGCCAGACATCTCAACTCTGTCAACTATGTTGGATGAAATTGTGAGAGTTGGGTTGATATT CTAA
AA sequence Show only first row Show all	>Lus10036524 pacid=23174547 polypeptide=Lus10036524 locus=Lus10036524.g ID=Lus10036524.BGIv1.0 annot-version=v1.0 MGIRAYLYASLSLAALFLILRLPITAFGYGSSGPVAAAFGSDGFFCAIDAGGKQEILCWDKDDTFTASSSSSGYFASLPTMASLSGGEEFLCGITSNTSQ AFCFKMSDPGTNLVPTRFRYTSYSKIAAGKKHACGIRGSYYSDGLEEYGGIDCWEFNQSISNSFSSSYVDSLLFKNIVAGDDFSCGVVKGTGVICWGPRS GKMDIPTLSSDFEILASGKSSVCGVSSHSREVQCWGEASEFGSSPTSETKFVDITTGGDYYCGIREDNHEVECWGNTVNSVQKGSGFLAIASSDSSACGI REVDLVLDCWNVRGKTPPDYRPPLQLCSPGICSSAESCPDRMFIFNASILNEPELSNVCARKYLKICLPCGTNCSEGYFPSSVCTKNADRICTACSLCQN SSCWDICGHPSLPHNNQMEQRQIKKLAFIIGISVAGFLLLFTAGCCLIFQIKRTRSQKTKCCHCIFCMSEPVVEADPDHDPEPPLPFTALYVGDAQVFRL SELKDATHGFKEFNELGRGSFGFVYKAVLSDGRHVVVKRANATTIIHTNSREFESELEILCGLRHANIVNLLGYCAEMGERLMVYEYMTHGTLYDHLHGE LSPLDWSLRLKISLQVARGLEYLHKEVIPSIVHQNLKTSKVLLDSGWGARIADFGFSHGNEHKEFDGNKESDVYSYGIILLEILSGRKAYDRECNPPGIV EWALPLIRSGKSAAIIDRNVALPRNVEPLLKVADVAEAALKENPSERPDISTLSTMLDEIVRVGLIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39180		CCR2, ATCRR2	CRINKLY4 related 2 (.1)		Lus10036524 [exp]	0	1
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	1.0	0.9734
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	2.8	0.9638
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	3.5	0.9729
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	6.2	0.9726
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	6.6	0.9706
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	7.9	0.9641
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	8.5	0.9644
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	8.7	0.9292
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	8.9	0.9699
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	10.4	0.9375

Compare expression of checked genes

Lus10036524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.