Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28880 995 / 0 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT5G05730 176 / 3e-46 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT2G29690 172 / 6e-45 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT3G55870 155 / 6e-40 ADC synthase superfamily protein (.1) AT1G25220 99 / 1e-22 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT5G57890 99 / 1e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 96 / 6e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 96 / 6e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 96 / 6e-22 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 90 / 9e-20 Glutamine amidotransferase type 1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041403 [exp] 1709 / 0 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10014842 [exp] 189 / 1e-50 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10016945 [exp] 170 / 2e-44 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014830 [exp] 170 / 3e-44 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10009888 [exp] 157 / 5e-40 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10030761 [exp] 105 / 2e-24 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10013241 [exp] 103 / 4e-24 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10023622 [exp] 66 / 9e-11 AT1G74710 623 / 0.0 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) Lus10024255 [exp] 55 / 3e-07 AT1G18870 459 / 2e-158 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221500 [exp] 1205 / 0 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.010G190600 [exp] 176 / 2e-46 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.009G044300 [exp] 160 / 3e-41 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1) Potri.008G138800 [exp] 100 / 4e-23 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G102200 [exp] 98 / 2e-22 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.008G066600 [exp] 69 / 7e-14 AT3G55870 213 / 3e-68 ADC synthase superfamily protein (.1) Potri.012G070000 [exp] 64 / 2e-10 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I CL0014 [flax] [poplar] PF00425 [flax] [poplar] Chorismate_bind chorismate binding enzyme CL0014 [flax] [poplar] PF04715 [flax] [poplar] Anth_synt_I_N Anthranilate synthase component I, N terminal region
Representative CDS sequence Show only first row Show all	>Lus10036525 pacid=23174459 polypeptide=Lus10036525 locus=Lus10036525.g ID=Lus10036525.BGIv1.0 annot-version=v1.0 ATGAAGTTGGGTGTGTGCTCATCATCTTGTTTGGATGTCAAAAGCCCCTCTTCTCACGAGGGTCTGCTGTGTGCCAATGGGAGTTTGCTACGGGCCTCCA AGGCCTTCCTGAAAGTTGGTTATGTTACCAAGACTGCAAGTGTGAAGGAATCTTCTTATCAGAACGGTAAGAGGTTGGTGGTAGCTAGCCACACTGTTCC TCGACACTTACAGGAGTCTTTCATTGGGAAGAAACAGCTGCAGGAGCCTATTCGGGAGGTGGATTTCGTTAGGACGCTATTGATTGACAACTATGACAGT TACACTTACAACATATACCAAGAGCTTTCTGTGGTCAATGGAGTGCCTCCTGTGGTGATTCGGAATGACGAATGGACTTGGGAACAACTATGCTGTTACT TGTATAAAGAAAAAGCATTTGACAATATCGTCATATCACCTGGACCCGGGACTCCTACATGTGCAGACATCGGTATATGTCTTCGGTTGCTACATGAATG CAGGGATATTCCTCTTCTGGGTATTTGTCTTGGTCACCAGGCCATGGGTTATGTGCATGGCGCACGTATTGTACATGCATCTGAACCAGTCCATGGACGT CTGAGTGAAATTGAACATGATGGGTGCAGATTGTTTAGTAATATCCCTTCTGGTCCAGAATCTGGCTTCAAGGTGGTACGCTATCATTCTCTTGTCATCG ATGCAGAATCATTGCCAAAGGAACTCATACCAATTGCTTGGACTACCTCCATTGGGACACATTCTTTCCTTGAAACACATAGCTCTAGGGCCCTTCCTCA TGAGCTTGAGCACCAGATTACCGTTGATGACTTTTATAATGACCTTTCAGCAGCAATACAAGATGTTAGCTTTCAGTCTTCTAACCATTCTGGAAACATG CTTAGGAGAAAAGTTGTTATGGGCATTAAGCATTCTACTTGGCCTCATTATGGCTTGCAGTTCCATCCGGAGAGCATTGCCACCTGTCACGGTAGACAAA TTTTTGAGAACTTTAGGGAGATCACTGAGGATTATTGGCAGAAATCGAGGTCAGCATCTATCAATGGACGTAGAATTCATTACCCTGCACGCATGCAGGT GTCAGATGCTAGTAATCTATTTCAAGTTTCTAAGAGTAGGCAGTTGGTATGCAATGCAAGTGATCACCCATTTGCCGATGCTTCTTTAAGAAGAGAACTA AGGGTCAATGCAGATGTTGCGGAGTCAAGTCGGCTGAACTTCTCCGTTTCAGGCATCAGTCATAAGCATTTGAAATTGAAATGGAGGAAATTTGATCAAT TTGCATCGCGCATTGTTCTTCAGTTGAAAAGGTATTTCTTTTGCCTTCAAAACTACTTCTTCTTGTGCAGAGCTCGTTTCTCTTTCATGGGAGGTAAAGG TGGAGCACTTTGGAAACAAATGACTTTTAAACTGTCAGATAAAAGTGGTGGGGATTCTAAAGGTGGAGGTCACTTATCAATTGAAGATTCTGAAGGGTCT ACCAATAGCATTTTCTTGGAGAATGGCTTTCTTGATTTCTTAAATCAGGAGCTTCAATCATATGATTATGATGAAAAAGATTTTGAAGGCCTACCGTTCG AATTTTATGGTGGATACATTGGTTACCTTGGGTACGGCCTCAAAGTTGAATGCAGCAGAATATCTAACCAACATGAATCTGGAACACCTGATGCCTGCTT TTTCTTTGCTGACAAATTTGTAGTCATCGACCACAGTACAGATGACGTATACATATTATCAGTACATGAGGCAGGCACTAGTAGCATGGAATGGTTAGAT GATACTCAAAACAAGCTCCTCCATTTGCACCCTACTTCTTCAACCAAATCAAATGTTCAAATTCCCCAGACTAGCTCATTTTCCCCCTCCGAGGAGGGTT TTCGCCCTGAGAAATCTAGAGCGCAGTATATTGAAGATGTTAACAAGTGTCTGGATTACATCAAGGATGGAGAAAGCTACGAGTTATGTTTCACTTCTCA GTTACGGAAACGAGTTGGAGATATTGATTCTTTGGGACTTTACCTTCACCTTAGAAAGAAAAACCCTGCGCCATATGCTGCATGGCTTAATTTCTCAAGT GAAAATCTGTCCATCTGCTGTTCTTCACCCGAAAGGTTCCTGCGCTTGGACGGAGATGGTGTACTAGAAGCCAAGCCTATTAAGGGCACGATAGCTCGGG GCACAACTAAGACAGAGGATGAACAGCTTAAAACTCAATTGCAGTATAGTGAAAAGGATCAAGCCGAAAACCTTATGATTGTGGACCTTCTAAGGAATGA CCTTGGTCGTGTCTGCGAGCCTGGCTCTGTCCATGTCCCACGTCTCATGGAAGTGGAATCATATGCAACGGTCCATACGATGGTAAGCACGATTCGGGGC CAAAAGAAGCCAAGTGTGAGTGCGGTAGACTGTGTCAAAGCTGCATTTCCAGGGGGGTCAATGACAGGTGCTCCAAAGTTGAGATCAATGGAAATTCTGG ATGGATTGGAAAGCTGCTCTCGCGGAATCTACTCTGGGTCGATTGGGTATTTCTCATACAAGAAAACGTTTGATCTTAACATTGTGATAAGAACAGTGGT GGTACACCAAGGTGAAGCCTCAATAGGAGCAGGTGGAGCCATAGTTGCTCTGTCAAATCCTGAGGATGAGTATGATGAGATGTTGCTGAAAACTCATGCA CCGGCAAGAGCTGTGATAGATTTCGAATAG
AA sequence Show only first row Show all	>Lus10036525 pacid=23174459 polypeptide=Lus10036525 locus=Lus10036525.g ID=Lus10036525.BGIv1.0 annot-version=v1.0 MKLGVCSSSCLDVKSPSSHEGLLCANGSLLRASKAFLKVGYVTKTASVKESSYQNGKRLVVASHTVPRHLQESFIGKKQLQEPIREVDFVRTLLIDNYDS YTYNIYQELSVVNGVPPVVIRNDEWTWEQLCCYLYKEKAFDNIVISPGPGTPTCADIGICLRLLHECRDIPLLGICLGHQAMGYVHGARIVHASEPVHGR LSEIEHDGCRLFSNIPSGPESGFKVVRYHSLVIDAESLPKELIPIAWTTSIGTHSFLETHSSRALPHELEHQITVDDFYNDLSAAIQDVSFQSSNHSGNM LRRKVVMGIKHSTWPHYGLQFHPESIATCHGRQIFENFREITEDYWQKSRSASINGRRIHYPARMQVSDASNLFQVSKSRQLVCNASDHPFADASLRREL RVNADVAESSRLNFSVSGISHKHLKLKWRKFDQFASRIVLQLKRYFFCLQNYFFLCRARFSFMGGKGGALWKQMTFKLSDKSGGDSKGGGHLSIEDSEGS TNSIFLENGFLDFLNQELQSYDYDEKDFEGLPFEFYGGYIGYLGYGLKVECSRISNQHESGTPDACFFFADKFVVIDHSTDDVYILSVHEAGTSSMEWLD DTQNKLLHLHPTSSTKSNVQIPQTSSFSPSEEGFRPEKSRAQYIEDVNKCLDYIKDGESYELCFTSQLRKRVGDIDSLGLYLHLRKKNPAPYAAWLNFSS ENLSICCSSPERFLRLDGDGVLEAKPIKGTIARGTTKTEDEQLKTQLQYSEKDQAENLMIVDLLRNDLGRVCEPGSVHVPRLMEVESYATVHTMVSTIRG QKKPSVSAVDCVKAAFPGGSMTGAPKLRSMEILDGLESCSRGIYSGSIGYFSYKKTFDLNIVIRTVVVHQGEASIGAGGAIVALSNPEDEYDEMLLKTHA PARAVIDFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	0	1
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	1.0	0.8265
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	3.7	0.8103
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	6.3	0.8083
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	7.1	0.7940
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	9.5	0.7785
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10000116 [exp]	14.7	0.7242
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	15.7	0.8098
AT4G36640			Sec14p-like phosphatidylinosit...		Lus10023956 [exp]	17.7	0.7372
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10018517 [exp]	19.7	0.7353
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	19.9	0.7584

Compare expression of checked genes

Lus10036525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.