Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54950 639 / 0 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT2G39220 639 / 0 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT4G29800 561 / 0 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 277 / 1e-89 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G37060 146 / 3e-39 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37070 140 / 3e-37 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT2G26560 128 / 1e-32 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37050 120 / 9e-30 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT5G43590 107 / 3e-25 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041402 [exp] 879 / 0 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10040394 [exp] 754 / 0 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 691 / 0 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 367 / 7e-124 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 223 / 4e-70 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10022040 [exp] 218 / 2e-67 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10036212 [exp] 159 / 2e-44 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10009340 [exp] 153 / 9e-42 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 128 / 3e-32 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G040500 [exp] 723 / 0 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.010G221700 [exp] 717 / 0 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.012G123900 [exp] 415 / 1e-142 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 405 / 1e-138 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.002G052600 [exp] 283 / 7e-92 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.005G210100 [exp] 283 / 7e-92 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.007G042200 [exp] 159 / 4e-44 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.002G128300 [exp] 151 / 4e-41 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.002G128000 [exp] 137 / 4e-36 AT2G26560 543 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134200 [exp] 134 / 7e-35 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10036526 pacid=23174475 polypeptide=Lus10036526 locus=Lus10036526.g ID=Lus10036526.BGIv1.0 annot-version=v1.0 ATGGAATACGCTAGTCGTCAGTTGTCACAAATGCAAGAGCCCAGCATCGACACCGACAAACTCAGTTACGAAATTTTTTCAATCCTGGAAAGCAAGTTCC TTTTCGGCTATGACGACCAGAAACTCTGGATTCCGACGCCCCAACATCTGACGACTCCGCCTGCTGCCGATGTCGGCGTCGCTGCCGTCAAGAACCAGCG AGGTAAAATCTGTATACTATCAATCGACGGCGGTGGAGGGATGAGAGGGATTCTTGCCGGAAAAGCTTTGGCCTATCTCGAACAAGCGCTCAAAAAGAAA TCAGGCAATCCTGACGCGAGAATCGCGGATTACTTCGACGTGGCGGCCGGAACAGGCGTCGGCGGGATCTTCACGGCGATGCTGTTCGGGACCCAAGACC AAATCCGCCCGATTATGGAGGCGGAGGACACATGGAAGTTCCTCGCCGATAATGGAAGACGGTTCTTCCGGCCAGCAGCAGGTAATGGTAGCGGGTTTCT AAAGCGGGCTTTCGGAACAGGGTCGGGTTCAGGAACGGTCGGGTTGGAGAAAGCAATGAAAGAGACGTTCGAGCAATTAACTCTGAAAGATACATTGAAA CCCATTTTGATCCCTTGCTACGACCTCTCCAGCACGGCGCCGTTTCTCTTCTCTCGTGCAGATGCTTTAGAGACCGACAGCTTCGATTTCCGCCTATGGG AGGTTTGCCGGGCTACGTCGGCCGACCCGGGGATGTTCGAGCCGGTTCAGCTGAGGTCGGTCGATGGTCGTACCAAGTGTTTAGCAATCGACGGTGGGCT AGCGATGAGCAATCCAACCAGTGCGGCGATCACCCACGTGCTGCACAACAAACAAGAGTTCCCGTTCGTGAGAGGCGTCGAGGATTTGCTGGTGCTGTCG CTCGGCACCGGCGGCCAACTGGTTGAAGTTAGCTACGACTATGAGCAAGTCAAAGCGTGGAAGCCCAAGCACTGGGCGAGACCCATGGCTCGCATTTCCG GTGATGTTTCCACTGATTCTGTGGACCAGGCCGTGGCCATGGCGTTCGGTCAGTGTCGGAGTAGCAACTACTTGAGGATTCAGGCGAATGGGTCAAGCTT AAGCAGGTGCGGTGCCAATATTGAAACTGAGGCTAGTCCTAAGAACGTGAAGCTGCTGTTGGGAATGGCAGAGGAAATGCTAAAGCAGAAAAATGTAGAG TCAGTGCTGTTTGGAGGTAAAAGGATAGGTGAGCATAGTAACTTTGAGAAGCTGGACTGGTTTGCAGGTGAACTTGTGCTGGAACATCAGAAGAGGAGCT GCAGAATTGCTCCCACTGTTGCTTTCAAGCAGCAAGTTACTGCTGCAGCCAGACCCACATGA
AA sequence Show only first row Show all	>Lus10036526 pacid=23174475 polypeptide=Lus10036526 locus=Lus10036526.g ID=Lus10036526.BGIv1.0 annot-version=v1.0 MEYASRQLSQMQEPSIDTDKLSYEIFSILESKFLFGYDDQKLWIPTPQHLTTPPAADVGVAAVKNQRGKICILSIDGGGGMRGILAGKALAYLEQALKKK SGNPDARIADYFDVAAGTGVGGIFTAMLFGTQDQIRPIMEAEDTWKFLADNGRRFFRPAAGNGSGFLKRAFGTGSGSGTVGLEKAMKETFEQLTLKDTLK PILIPCYDLSSTAPFLFSRADALETDSFDFRLWEVCRATSADPGMFEPVQLRSVDGRTKCLAIDGGLAMSNPTSAAITHVLHNKQEFPFVRGVEDLLVLS LGTGGQLVEVSYDYEQVKAWKPKHWARPMARISGDVSTDSVDQAVAMAFGQCRSSNYLRIQANGSSLSRCGANIETEASPKNVKLLLGMAEEMLKQKNVE SVLFGGKRIGEHSNFEKLDWFAGELVLEHQKRSCRIAPTVAFKQQVTAAARPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036526 [exp]	0	1
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10023147 [exp]	10.5	0.6686
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	13.3	0.7126
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	20.9	0.6968
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10029622 [exp]	21.9	0.6982
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10020364 [exp]	27.0	0.6766
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10025241 [exp]	29.7	0.6518
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	31.3	0.6839
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	36.7	0.6795
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10025636 [exp]	38.9	0.6427
AT3G11640			unknown protein		Lus10000027 [exp]	47.6	0.6558

Compare expression of checked genes

Lus10036526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.